Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2091 219 6e-55 seq2217 210 3e-52 seq2976 206 4e-51 seq2587 138 2e-30 >seq2091 Length=1041 Score = 219 bits (242), Expect = 6e-55 Identities = 209/258 (81%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 465 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 522 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | ||||||||||| | ||||| | ||||| | | |||| | || Sbjct 523 CTCGTTCATGGGGAACAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 582 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 583 ACCCGGGCCTTTCGGCCAGGGA---ACACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 639 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 640 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAGA 696 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 697 AGCCGCCTGTCCCTCTAA 714 >seq2217 Length=28776 Score = 210 bits (232), Expect = 3e-52 Identities = 207/258 (80%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| Sbjct 454 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATTTC 396 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||| | | ||||||||||| | || || | ||||| | | |||| | || Sbjct 395 -TCGTTCATGGGGAACAATTGCAAGTCCCAATTCCTAGCACGAAGGAGGTTCAGCGGGTT 337 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| | | | || || ||| | | ||||||||||||||||||| Sbjct 336 ACCCGGGCCTTTCGGCCAGG---AAACACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 280 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||||||||||||||||||||||||||||||||| || ||||| || |||| | ||| | Sbjct 279 GCCCAGAACATCTAAGGGCATCACAGACCTGTTACTG-CTCAATCT--CGTGCGGCTAGA 223 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 222 AGCCGCCTGTCCCTCTAA 205 >seq2976 Length=29344 Score = 206 bits (228), Expect = 4e-51 Identities = 185/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| | Sbjct 4427 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGTGCTTACTGGGAATT-C 4370 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||||| | | |||| |||||| | ||||| | ||||| | | |||| | || Sbjct 4369 TTCGTTCATGGGGAACATTTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 4310 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| |||||||||| | || || ||| | | ||||||||||||||||||| Sbjct 4309 ACCCGGGCCTTTCGGCCAAGGA---ACACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 4253 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 4252 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 4208 >seq2587 Length=99143 Score = 138 bits (152), Expect = 2e-30 Identities = 140/178 (79%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 14 GGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACC 73 ||||||| ||||||||||||| |||||||||||||||| |||||| ||||||| | | Sbjct 28198 GGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-CCTCGTTCATGGGG 28255 Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 ||||||||||| | |||| | ||||| | | |||| | |||||||| ||| || Sbjct 28256 AACAATTGCAAGCCCCAATCCATAGCACGAAGGAGGTTCAGCGGGTTACCCGGGCCTTTC 28315 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 ||||| || | || || ||| | | |||||||||||||||||||||||||||||| Sbjct 28316 GGCCAGGGA---ACACGCGCTGATTCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACAT 28370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751977926450