Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq657 192 1e-46 seq2997 187 5e-45 seq2976 167 4e-39 seq2587 163 5e-38 >seq657 Length=1008 Score = 192 bits (212), Expect = 1e-46 Identities = 218/286 (76%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| | | ||| | || ||||||||||| ||||||||||| | Sbjct 582 TGCTCTTTACTGAGTGTCGAGTCGGGCCGGTACGTTTACTTTGAACAAATTAGAGTGCTT 641 Query 100 AAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | |||| Sbjct 642 AAAGCAGGCTACCTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 700 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 ||||||||||||||||| ||| | ||| |||||||||||||||| || ||||| | Sbjct 701 TCTATTTTGTTGGTTTC--GGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 758 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 759 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 818 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||||||||||| ||||||||||||| || Sbjct 819 CATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 863 >seq2997 Length=66827 Score = 187 bits (206), Expect = 5e-45 Identities = 217/286 (76%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| | | ||| || ||||||||||| ||||||||||| | Sbjct 19036 TGCTCTTTACTGAGTGTCGAGTCGGGCCGATACGTTTACTTTGAACAAATTAGAGTGCTT 18977 Query 100 AAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | |||| Sbjct 18976 AAAGCAGGCTACCTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 18918 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| | Sbjct 18917 TCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 18859 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 18858 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 18799 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||||||||||| ||||||||||||| || Sbjct 18798 CATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 18754 >seq2976 Length=29344 Score = 167 bits (184), Expect = 4e-39 Identities = 215/289 (74%), Gaps = 16/289 (6%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGT---GCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTG 96 ||| ||| |||| |||| |||||| || | || ||||||||||| ||||||||||| Sbjct 3458 TGCTCTTTACTGAGTGTCGAGCCGGG---CCGGTACGTTTACTTTGAACAAATTAGAGTG 3514 Query 97 TTCAAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGC 152 | ||| || || ||| | |||||| | |||||||||||| |||||||| | | Sbjct 3515 CTTAAATCAAGCTACCTTCGTCTGAATACTGTGTGCATGGAATAATGAAATAGGACCT-C 3573 Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGG 209 ||||||||||||||||||| | | | | ||| |||||||| ||||||| || ||||| Sbjct 3574 GGTTCTATTTTGTTGGTTT-TCGAAACCCCGAGGTAATGATTGATAGGGACAGATGGGGG 3632 Query 210 TGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 | ||||| || ||||||||||||||||||| ||||| || |||| Sbjct 3633 CATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGA 3692 Query 270 AAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||| || |||| |||||||||||||||| ||||||||||||| || Sbjct 3693 AAGCATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 3740 >seq2587 Length=99143 Score = 163 bits (180), Expect = 5e-38 Identities = 192/252 (76%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACATTA-GCA 129 ||||||| ||| | ||||||||| | ||||||||| |||||| |||||| | ||| Sbjct 29011 TTTACTT-GAACATATTAGAGTGCTTAAAGCAGGCTACCTTTGCCTGAATACTGTGTGCA 28953 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG---TAA 186 ||||||||| ||||||||| | || ||||||||||||||||| | ||| | ||| ||| Sbjct 28952 TGGAATAATGGAATAGGACCT-CGATTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAA 28895 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||||||| || |||| | | ||||| || |||||||||||| |||||| Sbjct 28894 TGATTAATAGGGACAGATGGGGATATTCGTATTGCGACGTTAGAGGTGAAATTTTTGGAT 28835 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 ||||| || |||||||| || |||| |||||||||||||||| |||| Sbjct 28834 CGTCGCAAGACGGACAGAAGCGAAAGCATTTGCCAAAAATGTTTTCATTAATCA-AGAAC 28776 Query 307 GAAAGTTAGGGG 318 |||||||| || Sbjct 28775 AAAAGTTAGAGG 28764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915172269440