Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2976 140 1e-30 seq2720 140 1e-30 seq693 136 2e-29 seq595 136 2e-29 seq2057 131 7e-28 seq2217 125 3e-26 seq645 125 3e-26 >seq2976 Length=29344 Score = 140 bits (154), Expect = 1e-30 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 10051 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 10110 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 | |||| ||| |||||| ||| |||| ||||| ||||||||||||||||| || ||||| Sbjct 10111 GAAAACCCTGATGGAGGTTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAAACTGGGT 10170 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 10171 ATAGGGGCGA 10180 Score = 131 bits (144), Expect = 7e-28 Identities = 117/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || ||||||||||| |||| || ||| | | ||||| ||||||| Sbjct 9180 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGAAAACTCCATCTAAGGCTAAAT 9239 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | | ||| ||||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 9240 A-CGACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAA 9298 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 9299 GAGAGAGTTCAAGAGTACGTGAAA 9322 >seq2720 Length=8669 Score = 140 bits (154), Expect = 1e-30 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 2539 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 2480 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 | |||| ||| |||||| ||| |||| ||||| ||||||||||||||||| || ||||| Sbjct 2479 GAAAACCCTGATGGAGGTTCGTAGCGATTCTGACGTGCAAATCGATCGTCGAAACTGGGT 2420 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 2419 ATAGGGGCGA 2410 >seq693 Length=1013 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 389 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 330 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 329 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 270 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 269 ATAGGGGCGA 260 >seq595 Length=1094 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 268 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 327 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| | ||||| Sbjct 328 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGT 387 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 388 ATAGGGGCGA 397 >seq2057 Length=1039 Score = 131 bits (144), Expect = 7e-28 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 647 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 706 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| |||||| |||||||||| | ||||| Sbjct 707 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAGATCGATCGTCGGAACTGGGT 766 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 767 ATAGGGGCGA 776 >seq2217 Length=28776 Score = 125 bits (138), Expect = 3e-26 Identities = 115/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||| ||| || ||||||||||| |||| |||||| | | ||||| |||||||| Sbjct 2489 AGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAACTCCATCTAAGGCTAAATA 2548 Query 101 TTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| | ||||||| |||| ||||| | ||||| |||||| | Sbjct 2549 -CGACCACGAGACCGATAGGGAACAAGTACCGTGAGGGAAAGTTTAAAAGAACTTTGAAG 2607 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 2608 AGAGAGTTCAAGAGTACGTGAAA 2630 Score = 125 bits (138), Expect = 3e-26 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||||||||||||||||||||| |||||||| ||| |||| ||| |||||| ||| Sbjct 3329 GTTGGGACCCGAAAGATGGTGAATTATGCCTGGTCAGGACGAAGTCAGGGGAAACCCTGA 3388 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | |||||||||| |||| Sbjct 3389 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCGGAACTGGGTATAGGTGCGA 3447 >seq645 Length=1267 Score = 125 bits (138), Expect = 3e-26 Identities = 118/147 (80%), Gaps = 5/147 (3%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCT---TCTAAAGCTA 96 |||||| |||| ||| || ||||||||||| |||| |||||| || ||||| |||| Sbjct 343 GAGTCGGGTTGCTTGAGAGTGCAGCTCTAAGTGGGTGGTAAAACTCCCAATCTAAGGCTA 402 Query 97 AATATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||| | ||| ||||||||||||| ||||||| |||| ||||| ||||||| ||||| Sbjct 403 AATAC-GACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTT 461 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAA 182 | | |||||||| || || |||||||| Sbjct 462 GAAGAGAGAGTTCAAGAGTACGTGAAA 488 Score = 118 bits (130), Expect = 4e-24 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 1150 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGTCAGGACGAAGTCAGG 1209 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 |||||| ||| |||||| || |||| ||||| ||||||||||||||||| Sbjct 1210 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTC 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079935006500