Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq2091 212 1e-52 seq2217 205 1e-50 seq2976 190 3e-46 seq2587 179 6e-43 >seq2091 Length=1041 Score = 212 bits (234), Expect = 1e-52 Identities = 217/293 (74%), Gaps = 48/293 (16%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 676 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| |||||||||||||| Sbjct 677 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTTG 734 Query 118 ---------AGCCACCAACCATAGTCGATGG-----------------------GGCTAT 145 | ||||| || || || || | |||| Sbjct 735 GTAGTAAAAACCCACCGGCCGAAGCCGGGGGCCTTCGCGATACCATTAAGGTACGCCTAT 794 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 795 TTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTA 854 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 855 AGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 907 >seq2217 Length=28776 Score = 205 bits (226), Expect = 1e-50 Identities = 216/292 (74%), Gaps = 47/292 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 302 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTACTG 243 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| |||||||||||||| Sbjct 242 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTCCCTCTAAGAAGATTTGTTTGTACGTTG 185 Query 118 ---------AGCCACCAACCATAGTCG-------------------ATGG---GGCTATT 146 | ||||| || || || | || | || || Sbjct 184 GTAGTAAAAACCCACCGGCCGAAGCCGGGGCCCTTCGCGATACCATAAGGTACGCCTTTT 125 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 124 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 65 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 64 GAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 13 >seq2976 Length=29344 Score = 190 bits (210), Expect = 3e-46 Identities = 213/292 (73%), Gaps = 47/292 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4275 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 4216 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA----------------G 115 | |||| || | |||| ||| || ||||||||||||| | Sbjct 4215 C-TCAATCT-CGTGCGGCTAGAAACCGCCTGTCCCTCTAAGAAAATTTGTTTGTACGTTG 4158 Query 116 CCAG-------CCACCAACCATAGTCGATGG----------------------GGCTATT 146 || ||||| || || || ||| | ||||| Sbjct 4157 GTAGTAAAAACCCACCGGCCGAAGCCGGTGGCCTTTGCGATACCATAAGGTACGTCTATT 4098 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||| ||||||||||||||| ||||||||| | | Sbjct 4097 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAGTTAACCAGACAAATCGCTCCACCAAATTA 4038 Query 207 GAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 4037 GAACGGACATGCACCACCACCCACCAAATCAAGAAAGAGCTATCAATCTGTC 3986 >seq2587 Length=99143 Score = 179 bits (198), Expect = 6e-43 Identities = 110/117 (94%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||| Sbjct 28402 CTATTTAGCAGGCTAGAGTCTCGTTCGCTATCGGAATTAACCAGACAAATCGCTCCACCA 28461 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 28462 ACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 28518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796776611430