Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2997 122 9e-26 seq657 122 9e-26 seq2587 104 2e-20 seq2976 95.1 1e-17 >seq2997 Length=66827 Score = 122 bits (134), Expect = 9e-26 Identities = 140/183 (77%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG---CCTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | |||||||| |||| || |||||| | Sbjct 19005 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTACCTTCGCCTGAATACTGTGT 18946 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 18945 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 18888 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 18887 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 18828 Query 184 GAT 186 ||| Sbjct 18827 GAT 18825 >seq657 Length=1008 Score = 122 bits (134), Expect = 9e-26 Identities = 140/183 (77%), Gaps = 9/183 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG---CCTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | |||||||| |||| || |||||| | Sbjct 613 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTACCTTCGCCTGAATACTGTGT 672 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| |||||| ||| | || | Sbjct 673 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTC--GGAACCCCGAGG 729 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 730 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 789 Query 184 GAT 186 ||| Sbjct 790 GAT 792 >seq2587 Length=99143 Score = 104 bits (114), Expect = 2e-20 Identities = 135/180 (75%), Gaps = 9/180 (5%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC-CA 68 ||||||| ||| | ||||||| | | ||||||||| |||||| |||||| | || Sbjct 29011 TTTACTT-GAACATATTAGAGTGCTTAAAGCAGGCTACCTTTGCCTGAATACTGTGTGCA 28953 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CGTAA 126 ||||||||| ||||||||| | || ||||||||||| ||||| | ||| | || |||| Sbjct 28952 TGGAATAATGGAATAGGACCT-CGATTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAA 28895 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| |||| ||| || |||| | | ||||| || | |||||||||| |||||| Sbjct 28894 TGATTAATAGGGACAGATGGGGATATTCGTATTGCGACGTTAGAGGTGAAATTTTTGGAT 28835 >seq2976 Length=29344 Score = 95.1 bits (104), Expect = 1e-17 Identities = 134/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC 66 || ||||||||||| ||||||||| | | ||| || || ||| | |||||| | Sbjct 3489 ACGTTTACTTTGAACAAATTAGAGTGCTTAAATCAAGCTACCTTCGTCTGAATACTGTGT 3548 Query 67 -CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--G 123 ||||||||||| |||||||| | |||||||||||||| ||||| | | | | || | Sbjct 3549 GCATGGAATAATGAAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGAAACCCCGAGG 3606 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| ||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 3607 TAATGATTGATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 3666 Query 184 GAT 186 ||| Sbjct 3667 GAT 3669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511984971200