Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01002034.1 Length=277 Score E Sequences producing significant alignments: (Bits) Value seq2846 439 4e-121 seq2680 167 4e-39 seq2973 163 4e-38 seq2774 147 3e-33 seq2999 145 1e-32 seq2908 134 2e-29 seq2765 129 9e-28 seq2467 129 9e-28 seq2607 127 3e-27 seq2729 123 4e-26 seq2927 78.8 1e-12 seq2757 75.2 2e-11 >seq2846 Length=3371529 Score = 439 bits (486), Expect = 4e-121 Identities = 263/278 (95%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 1 CTATTTTTTCGGAAAA-TAACGCTTTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGT 59 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2149539 CTATTTTTTCGGAAAAATAAAGCTTTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGT 2149598 Query 60 TTATGTACGGGTTTAGGTTTATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAG 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2149599 TTATGTACGGGTTTAGGTTTATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAG 2149658 Query 120 CTTGTGCAGTGGCTCTTAGGTTGATGGCAGACAACAAGACTCATCGGTTCAAGACAATGT 179 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 2149659 CTTGTGCAGTGGCTCTTAGGTTGATGGCAGAGAACAAGACTTATCGGTTCAAGACAATGT 2149718 Query 180 TTTATNNNNNNNNNNTAACGCACAATACCGCATGGTAATCACTAAGCTCTAACATACTGG 239 ||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2149719 TTTATGTTTTAAGTTTAACGCACAATAACGCATGGTAATCACTAAGCTCTAACATACTGG 2149778 Query 240 AGAGAATCTTCTTATAAGAGCCAATATGTAATTTTCGG 277 |||||||||||||||||||||||||||||||||||||| Sbjct 2149779 AGAGAATCTTCTTATAAGAGCCAATATGTAATTTTCGG 2149816 Score = 140 bits (154), Expect = 5e-31 Identities = 103/120 (86%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 19 ACGCTTTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTT 78 |||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 1372499 ACGCGTTACGATTTTCTTTGTGCGTTGACTGAAGTTCAAATTTATATACGGGTTTAGATT 1372558 Query 79 TATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTCTTAG 138 || |||| ||||||||||||||||| ||||||||||| ||||||| |||||||| || Sbjct 1372559 CATGATCAATACTTAACGTAACGTAAAGTGTTACGGAGAAACTTGTGCGGTGGCTCTAAG 1372618 >seq2680 Length=870558 Score = 167 bits (184), Expect = 4e-39 Identities = 115/129 (89%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGT 88 ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 226498 TTTTTGTTTGTGCATTGACTGAAGTTCAAATTTATGTACGGGTTTAGGTTTATGATCAGT 226557 Query 89 ACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTCTTAGGTTGATGGCA 148 ||||||||||||| |||||||||||||||||||| ||||| |||| | |||||||| Sbjct 226558 ACTTAACGTAACG-----CGTTACGGAGAAGCTTGTGCGGTGGCCCTTA-GCTGATGGCA 226611 Query 149 GACAACAAG 157 || ||| || Sbjct 226612 GAGAACGAG 226620 Score = 123 bits (136), Expect = 4e-26 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 19 ACGCTTTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTT 78 |||| ||| |||| ||||||||||| || |||||||| |||||||||| |||||||| Sbjct 226477 ACGCGTTACGATTTTCTTTGTGCGTTGGCTAAAGTTCAAATTTATGTACGAATTTAGGTT 226418 Query 79 ----TATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTC 134 ||| || ||||||||||||||||||| ||||||| |||||||||||| ||||| | Sbjct 226417 AGTTTATGATTAGTACTTAACGTAACGTAAAGCGTTACGAAGAAGCTTGTGCGGTGGCCC 226358 Query 135 TTAG 138 | || Sbjct 226357 TAAG 226354 >seq2973 Length=72376 Score = 163 bits (180), Expect = 4e-38 Identities = 102/110 (93%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGT 88 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 45076 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATGATCAGT 45135 Query 89 ACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTCTTAG 138 ||||||||||| ||| ||||| |||||||||||||||||||| || || Sbjct 45136 ACTTAACGTAATATAATGCGTTATGGAGAAGCTTGTGCAGTGGCCCTAAG 45185 >seq2774 Length=196766 Score = 147 bits (162), Expect = 3e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 19 ACGCTTTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTT 78 |||| ||| |||| ||||||||| ||||||||||||| ||||| ||||| |||||||| Sbjct 185328 ACGCGTTACGATTTTCTTTGTGCGTCGACTGAAGTTCAAATTTATATACGGATTTAGGTT 185269 Query 79 TATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTCTTA 137 ||| |||||||||||||||||||||| ||||||||||||||||||| |||||| ||| Sbjct 185268 TATGATCAGTACTTAACGTAACGTAAAGTGTTACGGAGAAGCTTGTGCGGTGGCTTTTA 185210 Score = 141 bits (156), Expect = 1e-31 Identities = 90/98 (92%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGT 88 ||||||||||| |||||||| ||||| ||||||||||||||||||| ||| | |||||| Sbjct 185344 TTTTTGTTTGTACGTTGACTAAAGTTTAAGTTTATGTACGGGTTTAAGTTATTGATCAGT 185403 Query 89 ACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGC 126 ||||||||||||||||| |||||||||||||||||||| Sbjct 185404 ACTTAACGTAACGTAACTCGTTACGGAGAAGCTTGTGC 185441 >seq2999 Length=2925822 Score = 145 bits (160), Expect = 1e-32 Identities = 93/100 (93%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 34 GTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGTACTTA 93 ||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| Sbjct 1387743 GTTTGTGCGTTGACTGAAGTTTAAGTTTATGTACGGGCTTAGGTTTATGATCAGTACTTA 1387802 Query 94 ACGTAACGTAAC-ACGTTACGGAGAAGCTTGTGCAGTGGC 132 |||||||||||| ||||||||||||||||||| ||||| Sbjct 1387803 ACGTAACGTAACGGAGTTACGGAGAAGCTTGTGCGGTGGC 1387842 Score = 138 bits (152), Expect = 2e-30 Identities = 96/108 (89%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 30 TTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGTA 89 |||| ||||||||||||||||||||||| |||||| ||||||||||| |||| ||| ||| Sbjct 1387698 TTTTCTTTGTGCGTTGACTGAAGTTCAAATTTATGCACGGGTTTAGGCTTATGATCGGTA 1387639 Query 90 CTTAACGTAACGTAACACGTTACGGAG--AAGCTTGTGCAGTGGCTCT 135 ||||||||||||||| |||||||||| |||||||||| | |||||| Sbjct 1387638 CTTAACGTAACGTAAAGCGTTACGGAGAAAAGCTTGTGCGGAGGCTCT 1387591 >seq2908 Length=268214 Score = 134 bits (148), Expect = 2e-29 Identities = 95/108 (88%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 19 ACGCTTTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTT 78 |||| ||| |||||| ||||||||||||||||||||| |||||||||||||||| || Sbjct 242572 ACGCGTTACATTTTT---TGTGCGTTGACTGAAGTTCAAATTTATGTACGGGTTTATGTC 242516 Query 79 TATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGC 126 ||| |||||||||||| |||||||||| ||||||||| | |||||||| Sbjct 242515 TATGATCAGTACTTAATGTAACGTAACGCGTTACGGAAACGCTTGTGC 242468 Score = 102 bits (112), Expect = 1e-19 Identities = 87/112 (78%), Gaps = 18/112 (16%) Strand=Plus/Plus Query 24 TTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAA 83 ||| ||||||||||||||||||||| ||||| ||||||||| | Sbjct 242588 TTAAATTTTTGTTTGTGCGTTGACTAAAGTTTAAGTTTATG------------------A 242629 Query 84 TCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTCT 135 |||||||||||||||||||||| |||||||||||||||||||| |||| || Sbjct 242630 TCAGTACTTAACGTAACGTAACTCGTTACGGAGAAGCTTGTGCGATGGCCCT 242681 >seq2765 Length=106670 Score = 129 bits (142), Expect = 9e-28 Identities = 92/106 (87%), Gaps = 6/106 (6%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTT------TAGGTTTATA 82 ||||||||||| |||||||||||||||| |||||||||||||| |||||||||| Sbjct 5738 TTTTTGTTTGTATGTTGACTGAAGTTCAAATTTATGTACGGGTTTAGGTTTAGGTTTATA 5797 Query 83 ATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAG 128 |||||||||||| |||||||||| ||||||||| ||||| ||||| Sbjct 5798 ATCAGTACTTAATGTAACGTAACGCGTTACGGAAGAGCTTATGCAG 5843 Score = 89.7 bits (98), Expect = 8e-16 Identities = 79/97 (81%), Gaps = 9/97 (9%) Strand=Plus/Minus Query 30 TTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTAT--AATCAG 87 |||| ||||| ||||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct 5706 TTTTTTTTGTACGTTGACTGAAGTTCAAGTTTATGTGCGGGTTTA-CTTTATGGTATCAG 5648 Query 88 TACTTAACGTAACGTAACACGTTACGGAGAAGCTTGT 124 ||| |||||||| | ||||||| |||||||| Sbjct 5647 TAC------TAACGTAATGCATTACGGAAAAGCTTGT 5617 >seq2467 Length=108637 Score = 129 bits (142), Expect = 9e-28 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 53 TTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGTACTTAACGTAACGTAACACGTTAC 112 || |||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| Sbjct 104389 TTTAAGTTTATGTACGGGTTTAGGTTTATGATCAGTACTTAACGTAACGTAACTCATTAC 104330 Query 113 GGAGAAGCTTGTGCAGTGGCTCTTAGGTTGATGG 146 |||||||||||||| |||| ||||| |||| || Sbjct 104329 GGAGAAGCTTGTGCGGTGGTTCTTACATTGAAGG 104296 >seq2607 Length=233371 Score = 127 bits (140), Expect = 3e-27 Identities = 92/109 (84%), Gaps = 12/109 (11%) Strand=Plus/Plus Query 30 TTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTT------------TAGGT 77 |||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 127292 TTTTCTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTAGGTTTAGGT 127351 Query 78 TTATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGC 126 |||| ||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 127352 TTATGATCAGTACTTAACGTAACGTAACGCGTTACGGAAGAGCTTGTGC 127400 Score = 95.1 bits (104), Expect = 2e-17 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 24 TTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTA 80 ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 127263 TTACATTTTTGTTTGTGCGTTGACTGAAATTCAAGTTTATGTACGGGTTTAGGTTTA 127207 >seq2729 Length=51553 Score = 123 bits (136), Expect = 4e-26 Identities = 91/106 (86%), Gaps = 10/106 (9%) Strand=Plus/Plus Query 29 TTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTT------TAGGTTTATA 82 ||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 43714 TTTTTGTTTGT----TGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTAGGTTTATG 43769 Query 83 ATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAG 128 ||||||||||||||||||| ||| ||||||||| ||||||||||| Sbjct 43770 ATCAGTACTTAACGTAACGCAACGCGTTACGGAAGAGCTTGTGCAG 43815 Score = 89.7 bits (98), Expect = 8e-16 Identities = 84/106 (79%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 19 ACGCTTTATATTTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTT 78 |||| ||| |||| ||||| ||||||||||||||||||||||||| |||||||| || Sbjct 43693 ACGCGTTACGATTTTCTTTGTACGTTGACTGAAGTTCAAGTTTATGTGCGGGTTTA-TTT 43635 Query 79 TATAATCAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGT 124 ||| ||||||| |||||||| | ||||||| ||||||| Sbjct 43634 TATGGTCAGTAC------TAACGTAATGCATTACGGAAGAGCTTGT 43595 >seq2927 Length=4912583 Score = 78.8 bits (86), Expect = 1e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 85 CAGTACTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTCTTA 137 |||||||||||| |||||||| ||||||||||||| |||||||||||| |||| Sbjct 4460413 CAGTACTTAACGCAACGTAACGCGTTACGGAGAAGTTTGTGCAGTGGCCCTTA 4460361 >seq2757 Length=236451 Score = 75.2 bits (82), Expect = 2e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 30 TTTTGTTTGTGCGTTGACTGAAGTTCAAGTTTATGTACGGGTTTAGGTTTATAATCAGTA 89 |||||||||||| ||||||| | || |||||||||| || | || |||| | || Sbjct 95797 TTTTGTTTGTGCATTGACTGTACTTTAAGTTTATGTGCGAGCCTAAGTTTGCGGCCGATA 95856 Query 90 CTTAACGTAACGTAACACGTTACGGAGAAGCTTGTGCAGTGGCTCTTAG 138 | |||||||| ||||| | || || ||| |||||| |||| |||||| Sbjct 95857 CGTAACGTAATGTAACGTGCTATAGAAAAGTTTGTGCTGTGGTTCTTAG 95905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787176893220