Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2091 228 2e-57 seq2217 214 3e-53 seq2976 212 1e-52 seq2587 136 7e-30 >seq2091 Length=1041 Score = 228 bits (252), Expect = 2e-57 Identities = 208/258 (81%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 718 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 661 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || Sbjct 660 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT--- 604 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 603 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 544 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 543 CAATTGTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 484 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 483 ACGTCCCTGCCCTTTGTA 466 >seq2217 Length=28776 Score = 214 bits (236), Expect = 3e-53 Identities = 205/258 (79%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| ||||| | ||||| || | ||||| || ||||||||||||| Sbjct 201 CTTCTTAGAGGGACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAGTAACAGGTCTGTG 258 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || || || Sbjct 259 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTTTCC 318 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 |||||| |||| | |||||| | | || ||| ||||||| || || | | ||| Sbjct 319 ---TGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGAATTGGGACTTG 375 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||| ||| || |||||||||| ||||| ||| |||||||||| Sbjct 376 CAATTGTTCCCCATGAACGAGAAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 435 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 436 ACGTCCCTGCCCTTTGTA 453 >seq2976 Length=29344 Score = 212 bits (234), Expect = 1e-52 Identities = 204/257 (79%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 73 TTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||| ||| | | ||||| || | ||||| ||||||||||||||||| Sbjct 4175 TTCTTAGAGGGACAGGCGGTTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTGA 4232 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| || || || || | Sbjct 4233 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTGTT---C 4289 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| |||| | |||||| | | || ||| ||||||| ||||| | | |||| Sbjct 4290 CTTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGC 4349 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 || | || | | | ||||| |||| || ||||||| || ||||| ||| ||||||||||| Sbjct 4350 AAATGTTCCCCATGAACGAAGAATTCCCAGTAAGCACGAGTCATAAGCTCGCGTTGATTA 4409 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 4410 CGTCCCTGCCCTTTGTA 4426 >seq2587 Length=99143 Score = 136 bits (150), Expect = 7e-30 Identities = 136/176 (77%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 141 ATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGG 200 |||||||||||||||||||||||||||||| || || || || || |||||| Sbjct 28370 ATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGCGTGTT---CCCTGGCCGA 28314 Query 201 AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 |||| | |||||| | | || ||| ||||||| |||| | | |||||||| || | Sbjct 28313 AAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTATGGATTGGGGCTTGCAATTGTTCC 28254 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 | | |||||||||| || |||||||||| ||||| ||| |||||||||||||||| Sbjct 28253 CCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGTCC 28198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947171299840