Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linepithema_20humile_20[refseq_20GCF_5F000217595.1_202011-06-10] 3,030 sequences; 219,500,750 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq702 425 2e-116 seq2976 405 2e-110 seq2587 403 5e-110 seq657 264 3e-68 seq2997 248 3e-63 seq2981 129 2e-27 >seq702 Length=1035 Score = 425 bits (470), Expect = 2e-116 Identities = 425/542 (78%), Gaps = 42/542 (8%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 11 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 70 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 130 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 131 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 190 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 191 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 250 Query 240 TCAAGG-CCATGCGAT--TCGTTAAGTTATTATGAATCACCAA----------GGA---G 283 | ||| || |||||| | |||||||| || ||||||| ||| | Sbjct 251 ACGAGGACCCTGCGATCAGCACAAAGTTATTCAGAGTCACCAAAGTAAACGGTGGACGGG 310 Query 284 C-----CCCGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAG 331 | |||| | || | | |||| |||||||||| | ||||||| | Sbjct 311 CGGTTACCCGTCCGCCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTTCCATCACTGG 370 Query 332 TCGGG---GTTTTTAGCATGTATTAGCTCTAGAA-TTACCACGGTTATCCATGTA---GT 384 ||||| | ||| ||||||||||||||||||| ||||||| |||||||| ||| || Sbjct 371 TCGGGACTCTGTTTTGCATGTATTAGCTCTAGAATTTACCACAGTTATCCAAGTAAATGT 430 Query 385 AAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG 444 ||||| ||| ||| ||| ||||||||||||||||||||||||| ||||||| || Sbjct 431 -GGGTACAATCTAATGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA--- 486 Query 445 ATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 ||| || | ||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 487 ATTCGGCATGCACTGAGACATGCATGGCTTAATCTTTGAGACAGGCATATGACTACTGGC 546 Query 503 AG 504 || Sbjct 547 AG 548 >seq2976 Length=29344 Score = 405 bits (448), Expect = 2e-110 Identities = 419/541 (77%), Gaps = 41/541 (8%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 3226 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 3167 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3166 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 3107 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||| |||||||||| ||||||| ||| ||||||||||||| |||||||| Sbjct 3106 TTCTCAGGCTCCTTCTCCGGAATTGAACCCTGATTTCCCGTTACCCGTTACAACCATGGT 3047 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||| |||||||| |||||| ||||||| || | ||||||| Sbjct 3046 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 2987 Query 240 TCAAGG-CCATGCGAT--TCGTTAAGTTATTATGAATCACCAA----------GGA---G 283 | ||| || |||||| | |||||||| || ||||||| ||| | Sbjct 2986 ACGAGGACCCTGCGATCAGCACAAAGTTATTCAGAGTCACCAAAGTAAACGGTGGACGGG 2927 Query 284 C-----CCCGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAG 331 | |||| | || | | |||| |||||||||| | ||||||| | Sbjct 2926 CGGTTACCCGTCCGCCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTTCCATCACTGG 2867 Query 332 TCGGG---GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTA 385 ||||| | ||| |||||||||||||||||||||||||| |||||||| ||| || Sbjct 2866 TCGGGAATCTGTTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGT- 2808 Query 386 AGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA 445 ||||| ||| ||| ||| |||||||||||| |||||||||||| |||| | | | | Sbjct 2807 GGGTACAATCTAATGAACCATAACTGATTTACTGAGCCATTCGCGGTTT---TATCTTAA 2751 Query 446 TT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || || | ||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2750 TTCGGCATGCACTGAGACATGCATGGCTTAATCTTTGAAACAAGCATATGACTACTGGCA 2691 Query 504 G 504 | Sbjct 2690 G 2690 >seq2587 Length=99143 Score = 403 bits (446), Expect = 5e-110 Identities = 417/537 (78%), Gaps = 42/537 (8%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||| ||||| | || | | || |||||||| ||||| | ||||||||||||| Sbjct 29278 TCATTCCGATTACGGGGCCTCGGATGAATCCTGTATCGTTATTTTTCGTCACTACCTCCC 29337 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 29338 CGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTATTTGGATGTGGTAGCCGTTTCT 29397 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 29398 CAGGCTCCTTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGTAGGC 29457 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 | ||||||||||| |||||||| |||||| ||||||| || | ||||||| | | Sbjct 29458 GCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGTACGA 29517 Query 244 GG-CCATGCGAT--TCGTTAAGTTATTATGAATCACCAA----------GGA---GC--- 284 || || |||||| | |||||||| || ||||||| ||| || Sbjct 29518 GGACCCTGCGATCAGCACAAAGTTATTCAGAGTCACCAAAGTAAACGGTGGACGGGCGGT 29577 Query 285 --CCCGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAGTCGG 335 |||| | || | | |||| |||||||||| | ||||||| ||||| Sbjct 29578 TACCCGTCCGCCACCGATTGGTTTTGATCTAATAAAAGCGTCCCTTCCATCACTGGTCGG 29637 Query 336 G---GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGT 389 | | ||| |||||||||||||||||||||||||| |||||||| ||| || ||| Sbjct 29638 GACTCTGTTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGT-GGGT 29696 Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-- 447 | ||| ||| ||| ||||||||||||||||||||||||| ||||||| || ||| Sbjct 29697 GCAATCTAATGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA---ATTCG 29753 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || | || ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 29754 GCATGCAC-TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTCGCAG 29809 >seq657 Length=1008 Score = 264 bits (292), Expect = 3e-68 Identities = 229/279 (82%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||| ||||| | || | | || |||||||| ||||| | ||||||||||||| Sbjct 347 TCATTCCGATTACGGGGCCTCGGATGAATCCTGTATCGTTATTTTTCGTCACTACCTCCC 288 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 287 CGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTATTTGGATGTGGTAGCCGTTTCT 228 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 227 CAGGCTCCTTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGTAGGC 168 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 | ||||||||||| |||||||| |||||| ||||||| || | | ||||| | | Sbjct 167 GCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGT-GCCGGTACGA 109 Query 244 GG-CCATGCGAT--TCGTTAAGTTATTATGAATCACCAA 279 || || |||||| | |||||||| || ||||||| Sbjct 108 GGACCCTGCGATCAGCACAAAGTTATTCAGAGTCACCAA 70 >seq2997 Length=66827 Score = 248 bits (274), Expect = 3e-63 Identities = 180/207 (87%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | || || ||||| ||||| | ||||||||| Sbjct 19268 GTACTCATTCCGATTACGGGGCCTCGGATGAATCCCGTATCGTTATTTTTCGTCACTACC 19327 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19328 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 19387 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 19388 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 19447 Query 180 AGGCCACTATCCTACCATCGAAAGTTG 206 |||| | ||||||||||| ||||| Sbjct 19448 AGGCGCAGAACCTACCATCGACAGTTG 19474 Score = 188 bits (208), Expect = 2e-45 Identities = 178/221 (81%), Gaps = 17/221 (8%) Strand=Plus/Plus Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCCGAA----GTCGGGGTT---TTTAGCATG 348 |||||||| |||||||||| | ||||||| |||||| | ||| ||||| Sbjct 21794 TTGGTTTTG-ATCTAATAAAAGCGTCCCTTCCATCACTGGTCGGGACTCTGTTTTGCATG 21852 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACGA 405 ||||||||||||||||||||| |||||||| ||| || ||||| ||| ||| ||| | Sbjct 21853 TATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTG-GGTACAATCTAATGAACCA 21911 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGACAT 463 ||||||||||||||||||||||| ||||||| || ||| || | ||| |||||| Sbjct 21912 TAACTGATTTAATGAGCCATTCGTGGTTTCACCTTA---ATTCGGCATGCACTGAGACAT 21968 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| Sbjct 21969 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 22009 >seq2981 Length=868677 Score = 129 bits (142), Expect = 2e-27 Identities = 122/151 (81%), Gaps = 11/151 (7%) Strand=Plus/Minus Query 359 AGAATTACCACGGTTATCCATGTA---GTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||| |||||||| ||| || ||| | ||| ||| ||| ||||||||||| Sbjct 783770 AGAATTACCACAGTTATCCAAGTAAATGTG-GGTGCAATCTAATGAACCATAACTGATTT 783712 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGACATGCATGGCTTA 473 |||||||||||||| ||||||| || ||| || || |||||||||||||||| Sbjct 783711 AATGAGCCATTCGCGGTTTCACCTTA---ATTCGGCAAGCACCGAGACATGCATGGCTTA 783655 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 || |||||||||||| |||||||||||||| Sbjct 783654 ATTTTTGAGACAAGC--ATGACTACTGGCAG 783626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510354234880