Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq15607 246 6e-63 >seq15607 Length=2888 Score = 246 bits (272), Expect = 6e-63 Identities = 149/156 (96%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 163 TGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAA 222 ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 2078 TGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGACAGTCGGGGGCATCAGTATTCAA 2137 Query 223 TTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAA 282 ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 2138 TTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAA 2197 Query 283 GGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||||| |||||||||||||||| Sbjct 2198 GGATGTTTTCATTAATCAG-GAACGAAAGTTAGGGG 2232 Score = 145 bits (160), Expect = 1e-32 Identities = 188/251 (75%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| ||| ||||| || |||| Sbjct 1704 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTCCAAATGCCTGAATATTTTGTGCAT 1763 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 |||||||| |||| ||| | | |||||| ||| ||||||| ||| || | |||||| Sbjct 1764 GGAATAATGAAATAAGACCT-CTGTTCTACTTTCATTGGTTTTTAGAACAAGAGGTAATG 1822 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 1823 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 1882 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 1883 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 1941 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 1942 AAAGTTAGAGG 1952 Score = 118 bits (130), Expect = 2e-24 Identities = 147/195 (75%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGT 184 |||||||||||| |||| ||| | | |||||| ||| ||||||| ||| || | || Sbjct 2393 GCATGGAATAATGAAATAAGACCT-CTGTTCTACTTTCATTGGTTTTTAGAACAAGAGGT 2451 Query 185 AATGATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||| ||| ||||| | |||||| | |||||||||||||||| Sbjct 2452 AATGATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTG 2511 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 || |||||||||| |||||||| || |||| ||||||||||||||||| | Sbjct 2512 GACCGTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AG 2570 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 2571 AACGAAAGTTAGAGG 2585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914915839552