Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq19621 284 4e-74 seq14142 284 4e-74 seq13223 120 1e-24 seq18337 100 9e-19 >seq19621 Length=2590 Score = 284 bits (314), Expect = 4e-74 Identities = 168/175 (96%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1546 AGTAGATAGGGACAGAAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 1605 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 1606 GAGGCATTTGGCTACCTTAAAAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTACTT 1665 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1666 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1720 >seq14142 Length=1524 Score = 284 bits (314), Expect = 4e-74 Identities = 168/175 (96%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGTAGATAGGGACAGAAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 238 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 239 GAGGCATTTGGCTACCTTAAAAGAGTCATAGTTACTCCTGCCGTTTACCCGCGCTTACTT 298 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 299 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 353 >seq13223 Length=1410 Score = 120 bits (132), Expect = 1e-24 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 287 AGTAGATAGGGACAGAAGGAATCTCGTTAATCCATTGATGCGCGTCACTAATTAGATGAC 228 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 227 GAGGCATTTGGCTA 214 >seq18337 Length=3699 Score = 100 bits (110), Expect = 9e-19 Identities = 65/70 (93%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| Sbjct 2116 AGTAGATAGGGACAGAAGGAATCGCGT-AATCCATTCATGCGCGTCACTAATTAGATGAC 2174 Query 419 GAGGCATTTG 428 || ||||||| Sbjct 2175 GACGCATTTG 2184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634692286752