Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 444 5e-120
seq2021 425 4e-114
seq12187 333 2e-86
>seq4853
Length=2014
Score = 444 bits (492), Expect = 5e-120
Identities = 832/1217 (68%), Gaps = 19/1217 (2%)
Strand=Plus/Plus
Query 65710 ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769
|||||||| || | || || ||||||| || || || || || |||| || | |
Sbjct 212 ACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAA 271
Query 65770 TGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829
||| || || || || || || || ||| || | || | || || | ||||| ||
Sbjct 272 TGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAATCCTTGTAC 331
Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTA 65889
||||||||| |||||||||||||||| ||| ||||| | ||||| || | ||||||||
Sbjct 332 TCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTA 391
Query 65890 ATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATT 65948
|||||| || || || |||||||| ||||| || | | | | | | | | | ||
Sbjct 392 ATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTG-AGTT 450
Query 65949 GTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGG 66008
|| |||||| || || | | || || || |||||| | || |
Sbjct 451 TTTTAAAATCATAA-GTCTTG-----TCTGGGTTG---------ACAAACATATTGAGTG 495
Query 66009 CAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGG 66068
||| || || | || || ||||| || || || || || | ||| || |||||||| |
Sbjct 496 CAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAG 555
Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128
|||| | ||| ||||| || ||||| | |||||||||||||||||||||||| || |
Sbjct 556 TGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAG 615
Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188
||||||| || | ||| || |||||||| || || ||||| | ||| || ||||| ||
Sbjct 616 CATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACC 675
Query 66189 AAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGA 66248
| | | | || || || || || || | ||||| || || || | || || |
Sbjct 676 ACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAA 735
Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCA 66308
| || ||||| ||||||||| ||||| || | || ||||||||||| ||||| |
Sbjct 736 GTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGA 795
Query 66309 GCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368
| |||||||| ||||| || ||||| ||| || | || |||||||| || || |
Sbjct 796 GTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGCAT 855
Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACT 66428
|||| | ||| ||||| || | ||| || |||| |||||| ||| || | ||||
Sbjct 856 AGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACT 915
Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488
|||| || || | ||||| ||||||| ||||||||||| | || |||||||||||
Sbjct 916 CAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGC 975
Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548
| || || || |||||||| || || || ||||| ||||||| ||| || || | || |
Sbjct 976 CTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCAT 1035
Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608
|||| ||||||| ||||| | ||| | ||| || ||||| || |||||||
Sbjct 1036 TAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATTCA 1095
Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668
| ||||| || || || | ||| ||||| || || | | || | | ||| || |
Sbjct 1096 GGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATAC 1155
Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728
| || ||||||||| | || || || ||| | || || ||||| || ||
Sbjct 1156 CCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTG 1215
Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGT 66788
|||| || | ||| || ||||| | ||||| ||||| || | || | ||||||
Sbjct 1216 TGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGT 1275
Query 66789 ACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGG 66847
| || || ||| | ||||| || | ||||| || || || | | |||| ||||||||
Sbjct 1276 AGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACA-CGCATCAGT 1334
Query 66848 AGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907
|| | |||||| || ||||| | | ||||| | || ||| ||||| ||||| ||
Sbjct 1335 AGATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGT 1394
Query 66908 GTCTTGATACCAAAGTA 66924
||||||| || |||||
Sbjct 1395 GTCTTGAATCCGAAGTA 1411
>seq2021
Length=2943
Score = 425 bits (470), Expect = 4e-114
Identities = 991/1489 (67%), Gaps = 48/1489 (3%)
Strand=Plus/Minus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || || || || || ||||| ||||| | ||| || | | ||| ||||| |||||
Sbjct 2150 ATCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGT 2091
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196
||| | ||| || |||| | |||||||| || |||| | ||| |||||||||||||
Sbjct 2090 CTTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTC 2031
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
|||||||| || || ||||| ||||| ||||| || || ||||||||| || |||||
Sbjct 2030 AGCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT 1971
Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315
| ||| | ||| | | | || |||||||| || |||||||||| | ||| || |
Sbjct 1970 TTTAAT-AGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCT 1912
Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375
|| || |||||| | || | || ||||| | ||||| ||| |||
Sbjct 1911 GCGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATAT 1852
Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|| ||| | | | | ||| | | || | | ||| ||| |||| | || ||||
Sbjct 1851 CATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGA 1792
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
| || || |||| ||||||||| |||||| || || || || ||||| ||||||
Sbjct 1791 ATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCAT 1732
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
| ||||| | ||||| ||||| || || || ||||| || || | | ||| || || |
Sbjct 1731 TATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTAC 1672
Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGT 65615
||| || | | |||| || | || || |||| ||||| | | | | ||
Sbjct 1671 GCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATA---GATCA--GT 1617
Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG---- 65671
| | | ||||||||| | || | |||| | ||| | || || ||
Sbjct 1616 AGGTGTTTTTTG-CCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCAT 1558
Query 65672 -AG----------GA--------AACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712
|| || || | || || ||| || || || | | |||
Sbjct 1557 AAGTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACA 1498
Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772
||||| || | || || ||||||| || || || || || |||| || | | |||
Sbjct 1497 GCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGC 1438
Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832
|| || || || || || || ||| || | || | || || | ||||| || ||
Sbjct 1437 TTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCC 1378
Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATT 65892
|||||| |||||||||||||||| ||| ||||| | ||||| || | |||||||||||
Sbjct 1377 AATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATT 1318
Query 65893 GATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTT 65951
||| || || || |||||||| ||||| || | | | | | | | | | || ||
Sbjct 1317 GATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTG-AGTTTTT 1259
Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011
|||||| || || | | || || || |||||| | || ||||
Sbjct 1258 TAAAATCATAA-GTCTTG-----TCTGGGTTG---------ACAAACATATTGAGTGCAA 1214
Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071
|| || | || || ||||| || || || || || | ||| || |||||||| ||||
Sbjct 1213 TTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGC 1154
Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131
| | ||| ||||| || ||||| | |||||||||||||||||||||||| || ||||
Sbjct 1153 ATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCAT 1094
Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191
|||| || | ||| || |||||||| || || || || | ||| || ||||| ||| |
Sbjct 1093 CCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACA 1034
Query 66192 GAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGT 66251
| | || || || || || || | ||||| || || || | || || || |
Sbjct 1033 AGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAGTT 974
Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311
| ||||| ||||||||| ||||| || | || ||||||||||| ||||| || |
Sbjct 973 GCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTG 914
Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371
||||||| ||||| || ||||| ||| |||| || |||||||| || || || |
Sbjct 913 ACCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAA 854
Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431
| | ||| ||||| || | ||| || |||| |||||| ||| || | |||||||
Sbjct 853 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 794
Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491
| || || | ||||| ||||| | ||||||||||| | ||| |||||||||||| |
Sbjct 793 ATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTC 734
Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540
| || || |||||||| || || || ||||| ||||||| ||| || ||
Sbjct 733 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCAC 685
>seq12187
Length=3570
Score = 333 bits (368), Expect = 2e-86
Identities = 512/728 (70%), Gaps = 7/728 (1%)
Strand=Plus/Plus
Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164
||||| |||||||| || ||||| |||||||| || ||||| | ||| || |||||||||
Sbjct 1016 AAGGCCGAAGCTTCATTTTGGACAGTGGAGGAAGTGGATTTATGCAAGGATATGAATGAC 1075
Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224
||||| || | ||| ||||| || ||||| ||||| || || |||
Sbjct 1076 TGGGAAAAATTGACAGATAATGAGAGGCATTTTATATCGCATGTTTTGGCATTTTTCGCC 1135
Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284
|| || || || || |||||||| ||||| | || |||||| || || || ||| |
Sbjct 1136 GCCTCTGATGGCATTGTCAATGAAAATTTGGTAGAGCGTTTCAGCCAAGAAGTACAAATA 1195
Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344
| |||||||||||||| || || ||||| ||||||||||| ||||| ||||| || |||
Sbjct 1196 ACTGAGGCGCGTTGTTTTTATGGTTTCCAAATTGCCATGGAAAATGTGCACTCTGAAATG 1255
Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404
||||| || | || || || ||||| | || ||||||| | || ||
Sbjct 1256 TACAGCATTTTGATTGACACCTACATACGTGACACAAAACAACGTGATTTTCTATTTAAC 1315
Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464
||||| || ||| | || || || ||| ||| || ||||||||| | |||||| |
Sbjct 1316 GCCATTGAAACGCTGCCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATCTCA 1375
Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524
| | |||| | |||||||| || | | |||||||| | || |||||| | ||
Sbjct 1376 TCGAAATCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATTTTC 1435
Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584
|||||||| || ||| | || || ||| | ||||||||||| || ||||| || |||
Sbjct 1436 TTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGCCTG 1495
Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644
|| ||| ||||||| |||| ||||| ||||| ||| |||||||||| ||||| ||||
Sbjct 1496 ACATTCTCCAATGAGCTGATTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTGTTTG 1555
Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGATTGTTC 61702
| ||||||| || ||||| | || |||| ||||| | ||| || |
Sbjct 1556 ATGTTCAAAC---ATTTGGTGCAGAAACCTAGTCG--TGAGCGCATACTTGAAATCATAT 1610
Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762
||||||| |||| || ||||| || ||||| ||||| || |||| || || || |
Sbjct 1611 GTGAGGCTGTAAAAATAGAACAAGAGTTTCTCACTGATGCGCTGCCTGTGAATCTGATTG 1670
Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822
|||||||||| ||| ||||| | ||||| || ||||| || || || | | ||||
Sbjct 1671 GCATGAATTGCAAACTTATGTCTGAATATATAGAGTTTGTGGCTGATCGCTTACTCGTCG 1730
Query 61823 ATTTGGGT 61830
| ||||||
Sbjct 1731 AATTGGGT 1738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397417556417360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |