Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4853 444 5e-120 seq2021 425 4e-114 seq12187 333 2e-86 >seq4853 Length=2014 Score = 444 bits (492), Expect = 5e-120 Identities = 832/1217 (68%), Gaps = 19/1217 (2%) Strand=Plus/Plus Query 65710 ACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 |||||||| || | || || ||||||| || || || || || |||| || | | Sbjct 212 ACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAA 271 Query 65770 TGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829 ||| || || || || || || || ||| || | || | || || | ||||| || Sbjct 272 TGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAATCCTTGTAC 331 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTA 65889 ||||||||| |||||||||||||||| ||| ||||| | ||||| || | |||||||| Sbjct 332 TCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTA 391 Query 65890 ATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATT 65948 |||||| || || || |||||||| ||||| || | | | | | | | | | || Sbjct 392 ATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTG-AGTT 450 Query 65949 GTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGG 66008 || |||||| || || | | || || || |||||| | || | Sbjct 451 TTTTAAAATCATAA-GTCTTG-----TCTGGGTTG---------ACAAACATATTGAGTG 495 Query 66009 CAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGG 66068 ||| || || | || || ||||| || || || || || | ||| || |||||||| | Sbjct 496 CAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAG 555 Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128 |||| | ||| ||||| || ||||| | |||||||||||||||||||||||| || | Sbjct 556 TGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAG 615 Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 ||||||| || | ||| || |||||||| || || ||||| | ||| || ||||| || Sbjct 616 CATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACC 675 Query 66189 AAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGA 66248 | | | | || || || || || || | ||||| || || || | || || | Sbjct 676 ACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAA 735 Query 66249 GGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCA 66308 | || ||||| ||||||||| ||||| || | || ||||||||||| ||||| | Sbjct 736 GTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGA 795 Query 66309 GCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGT 66368 | |||||||| ||||| || ||||| ||| || | || |||||||| || || | Sbjct 796 GTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGCAT 855 Query 66369 AGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACT 66428 |||| | ||| ||||| || | ||| || |||| |||||| ||| || | |||| Sbjct 856 AGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACT 915 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||| || || | ||||| ||||||| ||||||||||| | || ||||||||||| Sbjct 916 CAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGC 975 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || || || |||||||| || || || ||||| ||||||| ||| || || | || | Sbjct 976 CTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCAT 1035 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCA 66608 |||| ||||||| ||||| | ||| | ||| || ||||| || ||||||| Sbjct 1036 TAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATTCA 1095 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGC 66668 | ||||| || || || | ||| ||||| || || | | || | | ||| || | Sbjct 1096 GGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATAC 1155 Query 66669 CGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTG 66728 | || ||||||||| | || || || ||| | || || ||||| || || Sbjct 1156 CCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTG 1215 Query 66729 TGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGT 66788 |||| || | ||| || ||||| | ||||| ||||| || | || | |||||| Sbjct 1216 TGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGT 1275 Query 66789 ACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCATCAGG 66847 | || || ||| | ||||| || | ||||| || || || | | |||| |||||||| Sbjct 1276 AGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACA-CGCATCAGT 1334 Query 66848 AGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGG 66907 || | |||||| || ||||| | | ||||| | || ||| ||||| ||||| || Sbjct 1335 AGATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGT 1394 Query 66908 GTCTTGATACCAAAGTA 66924 ||||||| || ||||| Sbjct 1395 GTCTTGAATCCGAAGTA 1411 >seq2021 Length=2943 Score = 425 bits (470), Expect = 4e-114 Identities = 991/1489 (67%), Gaps = 48/1489 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || || || || ||||| ||||| | ||| || | | ||| ||||| ||||| Sbjct 2150 ATCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGT 2091 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | ||| || |||| | |||||||| || |||| | ||| ||||||||||||| Sbjct 2090 CTTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTC 2031 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 |||||||| || || ||||| ||||| ||||| || || ||||||||| || ||||| Sbjct 2030 AGCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT 1971 Query 65257 GTCAATGATACGACGTCCC-GATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAA 65315 | ||| | ||| | | | || |||||||| || |||||||||| | ||| || | Sbjct 1970 TTTAAT-AGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCT 1912 Query 65316 TTGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCG 65375 || || |||||| | || | || ||||| | ||||| ||| ||| Sbjct 1911 GCGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATAT 1852 Query 65376 ACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| | | | | ||| | | || | | ||| ||| |||| | || |||| Sbjct 1851 CATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGA 1792 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 | || || |||| ||||||||| |||||| || || || || ||||| |||||| Sbjct 1791 ATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCAT 1732 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 | ||||| | ||||| ||||| || || || ||||| || || | | ||| || || | Sbjct 1731 TATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTAC 1672 Query 65556 GCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCGT 65615 ||| || | | |||| || | || || |||| ||||| | | | | || Sbjct 1671 GCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATA---GATCA--GT 1617 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCG---- 65671 | | | ||||||||| | || | |||| | ||| | || || || Sbjct 1616 AGGTGTTTTTTG-CCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCAT 1558 Query 65672 -AG----------GA--------AACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 || || || | || || ||| || || || | | ||| Sbjct 1557 AAGTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACA 1498 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 ||||| || | || || ||||||| || || || || || |||| || | | ||| Sbjct 1497 GCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGC 1438 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 || || || || || || || ||| || | || | || || | ||||| || || Sbjct 1437 TTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCC 1378 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATT 65892 |||||| |||||||||||||||| ||| ||||| | ||||| || | ||||||||||| Sbjct 1377 AATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATT 1318 Query 65893 GATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-TACGTCGCAATTGTT 65951 ||| || || || |||||||| ||||| || | | | | | | | | | || || Sbjct 1317 GATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTG-AGTTTTT 1259 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 |||||| || || | | || || || |||||| | || |||| Sbjct 1258 TAAAATCATAA-GTCTTG-----TCTGGGTTG---------ACAAACATATTGAGTGCAA 1214 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || | || || ||||| || || || || || | ||| || |||||||| |||| Sbjct 1213 TTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGC 1154 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 | | ||| ||||| || ||||| | |||||||||||||||||||||||| || |||| Sbjct 1153 ATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCAT 1094 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 |||| || | ||| || |||||||| || || || || | ||| || ||||| ||| | Sbjct 1093 CCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACA 1034 Query 66192 GAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGT 66251 | | || || || || || || | ||||| || || || | || || || | Sbjct 1033 AGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAGTT 974 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311 | ||||| ||||||||| ||||| || | || ||||||||||| ||||| || | Sbjct 973 GCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTG 914 Query 66312 ACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGA 66371 ||||||| ||||| || ||||| ||| |||| || |||||||| || || || | Sbjct 913 ACCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAA 854 Query 66372 AGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAA 66431 | | ||| ||||| || | ||| || |||| |||||| ||| || | ||||||| Sbjct 853 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 794 Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491 | || || | ||||| ||||| | ||||||||||| | ||| |||||||||||| | Sbjct 793 ATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTC 734 Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTAC 66540 | || || |||||||| || || || ||||| ||||||| ||| || || Sbjct 733 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCAC 685 >seq12187 Length=3570 Score = 333 bits (368), Expect = 2e-86 Identities = 512/728 (70%), Gaps = 7/728 (1%) Strand=Plus/Plus Query 61105 AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGAC 61164 ||||| |||||||| || ||||| |||||||| || ||||| | ||| || ||||||||| Sbjct 1016 AAGGCCGAAGCTTCATTTTGGACAGTGGAGGAAGTGGATTTATGCAAGGATATGAATGAC 1075 Query 61165 TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCC 61224 ||||| || | ||| ||||| || ||||| ||||| || || ||| Sbjct 1076 TGGGAAAAATTGACAGATAATGAGAGGCATTTTATATCGCATGTTTTGGCATTTTTCGCC 1135 Query 61225 GCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTG 61284 || || || || || |||||||| ||||| | || |||||| || || || ||| | Sbjct 1136 GCCTCTGATGGCATTGTCAATGAAAATTTGGTAGAGCGTTTCAGCCAAGAAGTACAAATA 1195 Query 61285 TCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATG 61344 | |||||||||||||| || || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 1196 ACTGAGGCGCGTTGTTTTTATGGTTTCCAAATTGCCATGGAAAATGTGCACTCTGAAATG 1255 Query 61345 TACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAAT 61404 ||||| || | || || || ||||| | || ||||||| | || || Sbjct 1256 TACAGCATTTTGATTGACACCTACATACGTGACACAAAACAACGTGATTTTCTATTTAAC 1315 Query 61405 GCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACC 61464 ||||| || ||| | || || || ||| ||| || ||||||||| | |||||| | Sbjct 1316 GCCATTGAAACGCTGCCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATCTCA 1375 Query 61465 AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTT 61524 | | |||| | |||||||| || | | |||||||| | || |||||| | || Sbjct 1376 TCGAAATCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATTTTC 1435 Query 61525 TTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTG 61584 |||||||| || ||| | || || ||| | ||||||||||| || ||||| || ||| Sbjct 1436 TTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCATGCCTGGCCTG 1495 Query 61585 ACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTG 61644 || ||| ||||||| |||| ||||| ||||| ||| |||||||||| ||||| |||| Sbjct 1496 ACATTCTCCAATGAGCTGATTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTGTTTG 1555 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCC--GTCGGAGGAGCGTGTGGGTGAGATTGTTC 61702 | ||||||| || ||||| | || |||| ||||| | ||| || | Sbjct 1556 ATGTTCAAAC---ATTTGGTGCAGAAACCTAGTCG--TGAGCGCATACTTGAAATCATAT 1610 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 ||||||| |||| || ||||| || ||||| ||||| || |||| || || || | Sbjct 1611 GTGAGGCTGTAAAAATAGAACAAGAGTTTCTCACTGATGCGCTGCCTGTGAATCTGATTG 1670 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822 |||||||||| ||| ||||| | ||||| || ||||| || || || | | |||| Sbjct 1671 GCATGAATTGCAAACTTATGTCTGAATATATAGAGTTTGTGGCTGATCGCTTACTCGTCG 1730 Query 61823 ATTTGGGT 61830 | |||||| Sbjct 1731 AATTGGGT 1738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397417556417360