Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq3086 145 2e-30 >seq3086 Length=1379 Score = 145 bits (160), Expect = 2e-30 Identities = 266/386 (69%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 2517 CAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAA 2576 |||||| ||||| || |||| ||||||| ||| | ||| |||||| || |||||||| Sbjct 196 CAAATATCCAATAATTTCTATAGAAGATGCAATGAATGAAGACGACTATGAAGGTTGGAA 255 Query 2577 ATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAAC 2636 || ||||||| | ||||| |||||||||||||||||| || || || || || || Sbjct 256 ATTACTTACTGTAAAACTTGGGAATAAAGTTCAATTGGTTGGAGATGATTTATTTGTTAC 315 Query 2637 TAACACTGCTTAC--CTTGAAAAAGG--TATTGCAGAACACGCTGCTAACTCAATCCTTA 2692 | | || || | | ||||| || | |||| | | || || | | || | Sbjct 316 --AAATTGTAAACTAATAGGTAAAGGAATAGAGGAGAAAATG--GCAAATGCTGTACTAA 371 Query 2693 TCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAG 2752 |||| ||||| || || || | || |||||||||| ||||| |||||||| ||| Sbjct 372 TCAAGCCAAACCAGATAGGAACACTTACGGAAACTTTTGCTGCTATTGAAATGGCAAAAT 431 Query 2753 AAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCG 2812 | ||| |||| || | | ||||| || ||||||||||| ||||| |||| || Sbjct 432 TAAATGGCTACAGGGCTATTATTTCACATCGCTCAGGTGAAACAGAAGACACAACGATAT 491 Query 2813 CTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTG 2872 | | || ||||||| | || ||| ||||| ||||| || || |||| ||| ||| Sbjct 492 CCCACATATCAGTTGCGTCGAATTGTGGGCAAATAAAGACTGGCTCGCTGTCGCGTTCTG 551 Query 2873 ACCGTATTGCTAAATACAACCAATTG 2898 | | |||| || || || ||||| Sbjct 552 ATAGGCTTGCAAAGTATAATGAATTG 577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155980867569156