Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_031120.1
Length=241147
Score E
Sequences producing significant alignments: (Bits) Value
seq4032 118 2e-21
seq1262 96.9 5e-15
seq9887 91.5 2e-13
seq12975 84.2 3e-11
>seq4032
Length=2654
Score = 118 bits (130), Expect = 2e-21
Identities = 74/80 (93%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 4200 AGACCTTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAG 4259
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1297 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1356
Query 4260 TCCTGCCAGGGTCGCCACAT 4279
|| ||| ||||||||| ||
Sbjct 1357 TCTTGCATGGGTCGCCAAAT 1376
Score = 118 bits (130), Expect = 2e-21
Identities = 74/80 (93%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 4200 AGACCTTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAG 4259
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1560 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1619
Query 4260 TCCTGCCAGGGTCGCCACAT 4279
|| ||| ||||||||| ||
Sbjct 1620 TCTTGCATGGGTCGCCAAAT 1639
>seq1262
Length=72559
Score = 96.9 bits (106), Expect = 5e-15
Identities = 56/58 (97%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 4208 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 60811 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCTGGTTCGAGTCCAGC 60754
>seq9887
Length=3258
Score = 91.5 bits (100), Expect = 2e-13
Identities = 83/104 (80%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 3764 GTTCGAATCTCGTCGGGAGAACCATTTAGGACTGTAGTTCAGCTGGTTAGAATACTTGCC 3823
||||||||| |||| || |||| || | || |||||| ||||||||| ||||||
Sbjct 2643 GTTCGAATCCTATCGGAAGCACCA---AGAATAGTGGTTCAGTTGGTTAGAACGCTTGCC 2699
Query 3824 TGTCACGCAAGTGGTCGCGGGTTCGATTCCCGTCAGTCCTGCCA 3867
||||||||||| | |||||||||||| ||||||| | ||||||
Sbjct 2700 TGTCACGCAAGAGATCGCGGGTTCGAGTCCCGTCTATTCTGCCA 2743
Score = 87.8 bits (96), Expect = 3e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856
||||||||| ||||||||| ||||||||||||| ||| |||||||||||| | ||||||
Sbjct 3068 GTAGTTCAGTTGGTTAGAACGCTTGCCTGTCACGTAAGAGGTCGCGGGTTCAAATCCCGT 3127
Query 3857 CAGTCCTGCCATA 3869
| | ||||||||
Sbjct 3128 CTATTCTGCCATA 3140
>seq12975
Length=3907
Score = 84.2 bits (92), Expect = 3e-11
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 4221 AGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGCCAGGGTCGCCA 4276
|||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 3907 AGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAATCCTGCATGAGTCGCCA 3852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 771242954750280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |