Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq4032 118 2e-21 seq1262 96.9 5e-15 seq9887 91.5 2e-13 seq12975 84.2 3e-11 >seq4032 Length=2654 Score = 118 bits (130), Expect = 2e-21 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4200 AGACCTTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAG 4259 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1297 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1356 Query 4260 TCCTGCCAGGGTCGCCACAT 4279 || ||| ||||||||| || Sbjct 1357 TCTTGCATGGGTCGCCAAAT 1376 Score = 118 bits (130), Expect = 2e-21 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 4200 AGACCTTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAG 4259 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1560 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1619 Query 4260 TCCTGCCAGGGTCGCCACAT 4279 || ||| ||||||||| || Sbjct 1620 TCTTGCATGGGTCGCCAAAT 1639 >seq1262 Length=72559 Score = 96.9 bits (106), Expect = 5e-15 Identities = 56/58 (97%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 4208 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGC 4265 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 60811 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCTGGTTCGAGTCCAGC 60754 >seq9887 Length=3258 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/104 (80%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 3764 GTTCGAATCTCGTCGGGAGAACCATTTAGGACTGTAGTTCAGCTGGTTAGAATACTTGCC 3823 ||||||||| |||| || |||| || | || |||||| ||||||||| |||||| Sbjct 2643 GTTCGAATCCTATCGGAAGCACCA---AGAATAGTGGTTCAGTTGGTTAGAACGCTTGCC 2699 Query 3824 TGTCACGCAAGTGGTCGCGGGTTCGATTCCCGTCAGTCCTGCCA 3867 ||||||||||| | |||||||||||| ||||||| | |||||| Sbjct 2700 TGTCACGCAAGAGATCGCGGGTTCGAGTCCCGTCTATTCTGCCA 2743 Score = 87.8 bits (96), Expect = 3e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 3797 GTAGTTCAGCTGGTTAGAATACTTGCCTGTCACGCAAGTGGTCGCGGGTTCGATTCCCGT 3856 ||||||||| ||||||||| ||||||||||||| ||| |||||||||||| | |||||| Sbjct 3068 GTAGTTCAGTTGGTTAGAACGCTTGCCTGTCACGTAAGAGGTCGCGGGTTCAAATCCCGT 3127 Query 3857 CAGTCCTGCCATA 3869 | | |||||||| Sbjct 3128 CTATTCTGCCATA 3140 >seq12975 Length=3907 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 4221 AGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCCTGCCAGGGTCGCCA 4276 |||||||||||||||||||||||||||||||||||||| |||||| | ||||||| Sbjct 3907 AGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAATCCTGCATGAGTCGCCA 3852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771242954750280