Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq4088 140 2e-28 >seq4088 Length=5036 Score = 140 bits (154), Expect = 2e-28 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 64734 CACAACGATGAGAGCATTACCGGTGTCCGAATTGAACGGACCTTTTCTCTGCCCAACCCA 64793 ||||| || || |||| ||||||||| ||||||||||| |||||||| || |||||||| Sbjct 1686 CACAATGAAGAAAGCACTACCGGTGTTCGAATTGAACGAACCTTTTCCCTACCCAACCCC 1627 Query 64794 CCTCACTAAAGAGGTCTGTCTGGAATCGAACCAGCACTTATGCCTTGCTCGTCAATACTC 64853 | || | ||| | || |||||||| ||||||||| |||||||||| |||| ||| ||| Sbjct 1626 TCGCATTGAAGCGAGCTATCTGGAATTGAACCAGCATTTATGCCTTGATCGTTAATGCTC 1567 Query 64854 TCATCGTTGTGTGCC 64868 || |||||||||||| Sbjct 1566 TCTTCGTTGTGTGCC 1552 Score = 140 bits (154), Expect = 2e-28 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25144 CACAACGATGAGAGCATTACCGGTGTCCGAATTGAACGGACCTTTTCTCTGCCCAACCCA 25203 ||||| || || |||| ||||||||| ||||||||||| |||||||| || |||||||| Sbjct 1686 CACAATGAAGAAAGCACTACCGGTGTTCGAATTGAACGAACCTTTTCCCTACCCAACCCC 1627 Query 25204 CCTCACTAAAGAGGTCTGTCTGGAATCGAACCAGCACTTATGCCTTGCTCGTCAATACTC 25263 | || | ||| | || |||||||| ||||||||| |||||||||| |||| ||| ||| Sbjct 1626 TCGCATTGAAGCGAGCTATCTGGAATTGAACCAGCATTTATGCCTTGATCGTTAATGCTC 1567 Query 25264 TCATCGTTGTGTGCC 25278 || |||||||||||| Sbjct 1566 TCTTCGTTGTGTGCC 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247381552986904