Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq517028 358 2e-96 seq1389530 80.6 1e-12 >seq517028 Length=6016 Score = 358 bits (396), Expect = 2e-96 Identities = 414/549 (75%), Gaps = 18/549 (3%) Strand=Plus/Plus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 |||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 2451 CACTTCTGGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 2510 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || || || ||| | | |||| |||||||| ||||| |||| Sbjct 2511 ACAGTGCTCTACCCCCCAGAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 2568 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||| |||||||||| | Sbjct 2569 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAAGTCATCCCCTGCCT 2628 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| ||||||||||||||||||| | || ||||| ||||||||||| |||| Sbjct 2629 TTTCAACGGAAGTGGGTTCGGTCCTCCAGTCAGTGTTACCTAACCTTCAACCTGCTCATG 2688 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | ||||||||| | || ||| | |||||||||| |||||||| Sbjct 2689 GATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCT 2747 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| || ||| | | |||||| ||||| || || || |||| | | ||| Sbjct 2748 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCAT 2805 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||| |||||| | |||| | ||||| || | ||||| Sbjct 2806 TATACAAAAGGTACGCAGTCACC-----CAACAAAG-----TGGGCTCCCACTGCTTGTA 2855 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521 ||| | |||||||||| |||||||||||||| | | ||||| |||||| |||||||||| Sbjct 2856 CGCATACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 2915 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | |||||||||| |||||||||||| ||| || ||||||| ||| Sbjct 2916 ACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCA 2975 Query 582 GATTCACAC 590 ||||| || Sbjct 2976 TATTCAGAC 2984 >seq1389530 Length=1297 Score = 80.6 bits (88), Expect = 1e-12 Identities = 118/166 (71%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| |||||| ||| ||||||||||| | ||||||||||||||||||||||||| Sbjct 761 ACTTAAATAGATTTCGCGGAAAACCAGCTATCTCCAAGTTTGATTGGCCTTTCACCCCTA 820 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT-CTTA 260 | | ||||| |||||||| | ||||||||||||| | | | Sbjct 821 ATTATAAATCATCTTAATTTTTTTCAACAAATACAAGTTCGGTCCTCCAATAATTAATAA 880 Query 261 CCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT 306 |||||||||| ||| |||||||||| | ||||||||| Sbjct 881 AATTATCTTCAACCTGTTCATAACTAGATCACTTGGTTTCGGGTCT 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1792199185408