Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq517028 320 5e-85 seq1323899 150 5e-34 >seq517028 Length=6016 Score = 320 bits (354), Expect = 5e-85 Identities = 288/362 (80%), Gaps = 26/362 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||||| ||||| ||| |||||||||||||||| ||| | | ||| Sbjct 5239 GTCGGATTAGCTAGTTGGTAGGGTAAAGGCCTACCAAGGCGACGATCCGTAACTGGTCTG 5180 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 5179 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 5120 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 5119 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 5060 Query 343 CCTTCGGGTCGTAAAGCTCT---------------GTCCTCA-AG-GAAGA--------T 377 ||||||||||||||||| || | |||| || ||| | | Sbjct 5059 CCTTCGGGTCGTAAAGCACTTTAAGTTGGGAGGAAGGGCTCATAGCGAATACCTGTGAGT 5000 Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||| ||| || |||| |||||||||| |||||||||||||||||||||||| Sbjct 4999 TTTGACGTTACCAACAGAATAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACG 4940 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| | |||||||||| || ||| Sbjct 4939 AAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGCTTGATAA 4881 Query 498 GT 499 || Sbjct 4880 GT 4879 >seq1323899 Length=509 Score = 150 bits (166), Expect = 5e-34 Identities = 239/333 (72%), Gaps = 16/333 (5%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGT-AACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||| |||||||||| || || |||||||||| ||| ||| ||| || ||| || Sbjct 27 GATTAGGTAGTTGGTAAAGTTAAAAGCTTACCAAGCCGATTATCTTTAGTTGATCTGGGA 86 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| ||||| ||| | ||| | |||| || |||| || | |||||| Sbjct 87 GGATGATCAACCACAATGGGAATGAAA-ACGGCCCGAACTGAAT----AGTCTGCAGTGA 141 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345 ||||| ||| |||||| | || |||| |||||| | |||||| |||||||| Sbjct 142 GGAATTTTGGACAATGAGTTTT-GCTTGATCCAGCAATGTTGCGTGAATGATGAAGG--- 197 Query 346 TCGGGTC-GTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCC 402 | ||| |||||| ||| || | |||| ||||||| | || | | |||| | Sbjct 198 TGAAGTCTGTAAAGTTCTTTCGTT--GGAAATAATAATGATGTTATCCAAAAAAGAAGTC 255 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 ||||| |||| |||||||||||||||||||| ||| |||| | || ||||| | || Sbjct 256 CCGGCAAACTTCGTGCCAGCAGCCGCGGTAAAACGGGGGGGACAAGTGTTATTCATCCTT 315 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTT 495 ||| |||||||||||| ||||||||||| || Sbjct 316 ACT-GGGCGTAAAGGGCATGTAGGTGGTTTATT 347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1476671159808