Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Locusta_20migratoria_20[genbank_20GCA_5F000516895.1_202013-12-18] 1,397,492 sequences; 5,759,798,599 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq517028 340 6e-91 seq1383040 104 8e-20 seq1182880 86.0 2e-14 >seq517028 Length=6016 Score = 340 bits (376), Expect = 6e-91 Identities = 419/567 (74%), Gaps = 18/567 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| | | |||| || Sbjct 1016 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTGCGACCGATTTCC 1075 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | ||||| | ||||| | | |||||||||| ||| ||||| | ||||||||| Sbjct 1076 GACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCAG 1134 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 | ||||| ||||||| |||||||| | | || ||| | || ||| |||||| || | Sbjct 1135 TCAAACTGCCCACCATACACTGTCCTCGATCCGGATAACGGACCAGAGTTAGAA--CCTC 1192 Query 181 TACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | | | ||| |||||||||||| | | |||||| ||| |||| ||| ||| | Sbjct 1193 AAGGTTGCCAGGGTGGTATTTCAAGGATGGCTCCACGCAAACTGGCGTTCACGCTTCAAA 1252 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | |||||||||||||||||||| | | || ||| | | |||||| ||| ||||| Sbjct 1253 GCCTCCCACCTATCCTACACAAGCAAGCTCAAAGTCCAGTGCAAAGCTACAGTAAAGGTT 1312 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA-GCATCTTTACTCGTACTGCAATTTCA 356 | |||||||||| |||| |||||| || || ||||||| || | | |||||||| Sbjct 1313 CACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTTCAATTTCA 1371 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 | | | || ||| |||||||| | ||||||||||||||||||||||||||||||| Sbjct 1372 CTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTA 1431 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 1432 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGC 1491 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 ||| || | || || | || ||| || | |||||||||| ||| Sbjct 1492 TTCGATCAAGAGCTTCGC----------TTGCGCTAACCCCATCAATTAACCTTCCGGCA 1541 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||| || ||||| || Sbjct 1542 CCGGGCAGGCGTCACACCCTATACGTC 1568 >seq1383040 Length=1059 Score = 104 bits (114), Expect = 8e-20 Identities = 268/400 (67%), Gaps = 30/400 (8%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| |||||||||||| |||| ||||| | ||||||||||| |||||| ||| || Sbjct 679 ACCTTTGCACGCCTCCGTTACTTTTTAGGAGG-CGACCGCCCCAGTCAAACTAACCATCA 737 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAG--AGTG 193 ||||||| | || | | || |||| ||| | | | ||| | | Sbjct 738 TAAACTGTCCAC----CATTTAA------AATGTTAAATA--CTTTCCTTTCAAGAAATA 785 Query 194 GTATTTCAACAACGACTCCACAACC-----ACTAGCGTGGCCGCATCATAGTCTCCCACC 248 ||||||| ||| || |||| |||||||| | ||||||| || | Sbjct 786 CTATTTCACTTACGCCT----AACCTATTAACTAGCGTTAAGGGATCATAGGCTAATATT 841 Query 249 TATCCTACACAA--ACCGCACCG-AATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGG 304 ||| ||||| || | | || | ||| ||| || |||||| ||||| | ||||| Sbjct 842 TATACTACATAATGAAAGAACTGTAATT--AATTTAAAATTATAGTAAAGGTGCACGGGG 899 Query 305 TCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCT 364 ||||| |||| |||| | ||||||| || | | ||||||| | || || Sbjct 900 TCTTTCCGTCTAGCCGTAAATATTTCGCATCTTCACGAAAATTTCAATTTCGCTGGACCA 959 Query 365 GTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 424 | | ||||||| || ||||||||| |||||| ||| || | | ||| | ||| Sbjct 960 ATACTGGAGACAGTAGAAAAGTCGTTACACCATTCATGCGGGCCATCAATTAAATGGCAA 1019 Query 425 GGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCC 464 |||||||||||||||||||| ||||||||||| ||||| Sbjct 1020 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCC 1059 >seq1182880 Length=215 Score = 86.0 bits (94), Expect = 2e-14 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 187 CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCA 246 ||| |||||||||||| || |||| | | ||| |||| | | ||| || |||||| Sbjct 183 CAGGGTGGTATTTCAAGGTCGGCTCCTCCAGAACTGGCGTCCCGGTTTCACAGCCTCCCA 124 Query 247 CCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG-TCCCGGGGT 305 ||||||||||||| | || | || ||||| | |||||| ||| |||| || ||||| Sbjct 123 CCTATCCTACACAGATCGGTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTTCATGGGGT 64 Query 306 CTTTTCGTCCTGCCGCG 322 |||| |||| |||||| Sbjct 63 CTTTCCGTCTAGCCGCG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1678609096192