Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20cuprina_20[genbank_20GCA_5F001187945.1_202015-07-28] 1,713 sequences; 434,128,924 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq253 457 3e-124 >seq253 Length=360942 Score = 457 bits (506), Expect = 3e-124 Identities = 977/1449 (67%), Gaps = 8/1449 (1%) Strand=Plus/Minus Query 53211 ATGTACGATTTTAATCTGGTGTTGCTGCTGCTTCAGCAGATGTGCGtttttttAGTCATT 53270 |||||||| || ||||| | ||||||| | ||||||||||| |||| ||||||||| Sbjct 88636 ATGTACGAGTTCGATCTGATCCTGCTGCTCTTGCAGCAGATGTGTGTTTATTTAGTCATA 88577 Query 53271 GCGTGGTTAATGAGTAAAACGCCATTATTCATACCGTTAATGCAGGTCACGGTTCGTCTG 53330 || ||| |||||||||| ||| | |||| || ||| | | || || |||||||| Sbjct 88576 GCATGGGCGCTGAGTAAAACCCCACTTGTCATCCCTTTATTAAAAGTGACAATTCGTCTG 88517 Query 53331 CCGCATAAATTTCTCTGCTACATCGTCTTTTCCATCTTCTGCATCATGGGCACCTGGTTT 53390 || |||||| | | || ||| || | || || | || || | ||||| |||| ||| Sbjct 88516 CCACATAAAGTGATGTGTTACGTCATTTTCTCAGTTTTTTGTGTGATGGGAACCTATTTT 88457 Query 53391 GNGTTGCACATTGACGATTCTATTGCCAATACCCGTGCGATAGGCGCGGTAATGGGCGGC 53450 | || |||||| | ||||| || || || || ||||| || ||| | || | ||||| Sbjct 88456 GGTTTACACATTAATGATTCAATCGCTAACACACGTGCTATCGGCTCAGTGCTTGGCGGT 88397 Query 53451 TTACTCGGCGGTCCGGTCGTCGG-TGGGCTGGTTGGCCTGACCGGCGGGTTACATCGATA 53509 | ||||| || || | || || | || || || | || ||||| |||| ||||| Sbjct 88396 CTGCTCGGTGGACCTGCTGTTGGCTTTGC-CGTCGGTTTTACAGGCGGCCTACACCGATA 88338 Query 53510 TTCGATGGGGGGCATGACCGCGCTAAGTTGCATGATCTCGACCATCGTTGAAGGATTGCT 53569 ||| | || || |||||||| | || || ||| | || || || | |||||| || | Sbjct 88337 TTCTCTAGGAGGAATGACCGCCTTCAGCTGTATGGTATCAACAATTGCTGAAGGGCTGAT 88278 Query 53570 CGGCGGCCTGGTACACAGCATCCTGATCCGTCGCGGGCGCACTGATAAAGTCTTTAACCC 53629 || || |||||||| || | || || || | | |||||| | |||||||| Sbjct 88277 TGGTGGACTGGTACATCGCTACTACATGAAGCGTGGACAAATAGATAAAATATTTAACCC 88218 Query 53630 CATTACCGCTGGTGCCGTCACGTTCGTCGCTGAAATGGTGCAAATGCTGATCATCCTGGC 53689 | | |||||| | ||||| || || |||||||| | |||||||| || || | Sbjct 88217 CCTCACCGCTAGCTGTGTCACCTTTGTGGCTGAAATCATCCAAATGCTCATTATTTTATT 88158 Query 53690 GATCGCCCGACCTTATGAAGATGCGGTGCGTCTGGTGAGTAATATTGCTGCGCCAATGAT 53749 | || || |||| | || || | ||||| | ||||| || || || ||| | Sbjct 88157 ATTAGCACGCCCTTTCGGCGAAGCCTTAGAGCTGGTTAAAAATATCGCAGCACCCATGGT 88098 Query 53750 GGTCACCAATACCGTCGGCGCGGCGCTGTTTATGCGTATATTGCTCGATAAACGCGCGAT 53809 | | ||||| | || ||||| ||||||| ||||| |||||||| || || || Sbjct 88097 CATTGCTAATACGATTGGTGCGGCAATGTTTATTCGTATTTTGCTCGACCGCCGTGCCAT 88038 Query 53810 GTTTGAAAAATACACTTCGGCTTTTTCTGCCACTGCGCTGAAAGTGGCAGCCTCGACGGA 53869 |||||||||| || | || ||||| ||| || | ||| | || || || || Sbjct 88037 TGTTGAAAAATATACCACTGCATTTTCAGCCCAAGCCTTAAAAATTGCGCTCTGTACTGA 87978 Query 53870 AGGCATTTTGCGCCAGGGGTTTAACGAAGTGAACAGCATGAAAGTGGCTCAGGTGCTGTA 53929 || || || || |||||||||| || |||||||||||||| ||| | | | || Sbjct 87977 TGGGATCTTACGTAAGGGGTTTAATACAGATAACAGCATGAAAGTCGCTAAAATTATCTA 87918 Query 53930 TCTGGAGCTGGATATTGGTGCAGTCGCGATTACCGATCGAGAGAAATTGCTGGCCTTTAC 53989 || || || || |||||||| || || || || ||| ||||||| | | ||||||| Sbjct 87917 TCAAGAACTCGAAATTGGTGCCGTTGCCATCACGGATAGAGAGAAGATTTTAGCCTTTAT 87858 Query 53990 CGGAATTGGTGACGACCACCATTTACCCGGCAAACCGATTTCTTCAACTTATACTTTAAA 54049 || ||||||| || || |||| || || | || ||| | ||| | | Sbjct 87857 TGGTATTGGTGCTGATCATCATTGTCCAGGAACGCCTATTGCCTCAGAGCAATCGAGGCG 87798 Query 54050 AGCGATTGAAACCGGTGAAGTGGTCTACGCTGATGGCAACGAAGTACCTTATCGTTGCTC 54109 ||| ||||| | | ||||||||| || || ||||| || ||| ||||||| || || Sbjct 87797 AGCTATTGATAACAATGAAGTGGTTTATGCAGATGGTAATGAAACACCTTATAAATGTTC 87738 Query 54110 TTTGCATCCGCA-ATGCAAACTGGGGTCGACGCTGGTAATTCCGTTGCGTGGTGAAAATC 54168 ||| | || || ||| || || || || | || || || || | | ||||||||| Sbjct 87737 TTT-AAGCCCCACATGTAAGCTTGGATCCGCACTTGTTATCCCACTTAGAGGTGAAAATG 87679 Query 54169 AGCGGGTGATGGGCACCATCAAATTGTATGAAGCCAAAAACCGTTTATTTAGTTCAATCA 54228 | || || || || ||||| ||| | |||||||| || || || |||| ||||| || | Sbjct 87678 AACGCGTTATTGGTACCATTAAACTTTATGAAGCGAAGAATCGGCTATTCAGTTCTATTA 87619 Query 54229 ACCGCACGCTGGGCGAGGGGATTGCGCAACTGCTTTCGGCGCAGATCCTCGCCGGGCAAT 54288 |||| || ||||| || || || || || ||||||| ||||||||||| ||||||| Sbjct 87618 ACCGGACACTGGGTGAAGGTATCGCCAGTTTGTTTTCGGCTCAGATCCTCGCAGGGCAAT 87559 Query 54289 ATGAGCGGCAAAAAGCGATGCTCA-CCCAGTCAGAGATCAAACTGCTTCACGCCCAGGTG 54347 |||| | | || || | || | | || || || | || | | || || |||||| Sbjct 87558 ATGAAC-GTAATAAACAATCTTTATTACAATCTGAAGTGAAGTTATTACATGCACAGGTG 87500 Query 54348 AACCCCCATTTTTTGTTTAATGCGCTTAACACCATT-AAAGCGGTGATCCGTCGCGACAG 54406 || || || ||||| ||||||| ||||| |||| ||||||| || || || || || Sbjct 87499 AATCCACACTTTTTATTTAATG-TCTTAAATACATTGCAAGCGGTTATTCGCCGAGATAG 87441 Query 54407 CGAACAGGCCAGCCAGCTGGTGCAGTATCTTTCCACTTTTTTCCGCAAAAACTTAAAGCG 54466 | | || || | || || || |||||| |||| || || || | || ||| | ||||| Sbjct 87440 CCAGCAAGCAGGTCAACTCGTTCAGTATATTTCGACCTTCTTTAGAAATAACCTCAAGCG 87381 Query 54467 GCCTTCGGAGTTTGTTACTCTCGCCGACGAAATTGAACATGTGAATGCTTATCTGCAAAT 54526 || | | | || | | ||| ||| | ||||||||||||||||| | || || Sbjct 87380 TCCAGAGCAAGGCGCCACATTAGGCGAAGAATTAGAACATGTGAATGCTTACTTACAGAT 87321 Query 54527 TGAAAAGGCGCGCTTCCAGTCGCGGTTGCAGGTCAACATTGCTATTCCGCAAGAATTATC 54586 ||||| || || ||||| || || | | | | ||| || || | ||| Sbjct 87320 AGAAAAAGCACGTTTCCAAGAAAAATTACATATAGAGCTAGATATACCAGAACACTTAAA 87261 Query 54587 CCAGCAGCAATTGCCCGCGTTTACCCTGCAACCGATAGTGGAAAACGCCATTAAACATGG 54646 || ||||||| || ||| | || ||||| || || || || || |||||||| || Sbjct 87260 ACAAGTTAAATTGCCTGCCTTTTCACTACAACCCATTGTAGAGAATGCAATTAAACACGG 87201 Query 54647 GACATCACA 54655 || ||||| Sbjct 87200 TACTTCACA 87192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175542029073348