Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq36906 125 3e-26 seq33070 118 4e-24 seq8517 118 4e-24 seq54296 86.0 3e-14 >seq36906 Length=9798 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 437 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 496 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 497 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 556 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 557 TAGGGGCGA 565 >seq33070 Length=2474 Score = 118 bits (130), Expect = 4e-24 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| ||||||| Sbjct 1764 AGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAATA 1823 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 | | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | | Sbjct 1824 TAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAATA 1883 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 |||||||||| || |||||||| || | | ||| Sbjct 1884 GAGAGTTAAATAGTACGTGAAACTGCTTAGAGG 1916 >seq8517 Length=13206 Score = 118 bits (130), Expect = 4e-24 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 599 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 540 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 539 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 480 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 479 AGAGAGTTAAATAGTACGTGAAA 457 >seq54296 Length=2455 Score = 86.0 bits (94), Expect = 3e-14 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 || |||||||||||| | ||| ||| |||| ||| ||| || ||| |||| | || | Sbjct 2455 AATATGGTGAACTATACTTGATCAGGTTGAACTCAGGGGACACCCTGATGGAAGACCGAA 2396 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | |||||| ||||||||||||| |||| ||| |||||||||||| Sbjct 2395 ACCGTTCTGACGTGCAAATCGATTGTCAGCATTGAGTATAGGGGCGA 2349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078024991250