Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lucilia_20sericata_20[genbank_20GCA_5F001014835.1_202015-05-28] 92,075 sequences; 319,935,455 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq18681 170 6e-40 seq40968 125 2e-26 seq4689 125 2e-26 seq56615 102 3e-19 seq33583 87.8 6e-15 seq1339 78.8 3e-12 >seq18681 Length=6424 Score = 170 bits (188), Expect = 6e-40 Identities = 167/217 (77%), Gaps = 15/217 (7%) Strand=Plus/Plus Query 172 GTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT-------- 223 ||||| ||| || ||||||||| |||| ||||| |||||||||||||| | Sbjct 5165 GTTCCACTTAATCAATTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTTGATAA 5224 Query 224 -TGCGCCGAAACGG------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 ||| |||||| |||||||||||||||||| ||| | ||| | ||| | Sbjct 5225 ATGCCCCGAAAGATAATTATCTCCCACTTATTCTACACGTCTTATGTCTCCTTACACTGA 5284 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | || |||||||||||||||||| ||||||||||||||| ||| ||||||||||||| Sbjct 5285 CAGATTAGAGTCAAGCTCAACAGAATCTTCTTTCCCCGCTAATTATTCCAAGCCCGTTCC 5344 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 |||||||||| |||| ||||||| |||||||||| || Sbjct 5345 CTTGGCTGTGTTTTCACTAGATAATAGATAGGGAAAG 5381 >seq40968 Length=4617 Score = 125 bits (138), Expect = 2e-26 Identities = 71/72 (99%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3550 TAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 3609 Query 421 GGCATTTGGCTA 432 |||||||||||| Sbjct 3610 GGCATTTGGCTA 3621 >seq4689 Length=4768 Score = 125 bits (138), Expect = 2e-26 Identities = 71/72 (99%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4310 TAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 4251 Query 421 GGCATTTGGCTA 432 |||||||||||| Sbjct 4250 GGCATTTGGCTA 4239 >seq56615 Length=2369 Score = 102 bits (112), Expect = 3e-19 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2197 GACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTTGATGACGAGGCATTTG 2138 Query 429 GCTA 432 | || Sbjct 2137 GTTA 2134 >seq33583 Length=8120 Score = 87.8 bits (96), Expect = 6e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 661 >seq1339 Length=27151 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAAT 389 ||| | |||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 5545 CTTTGTTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATGTCGTTAAT 5493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1633694389600