Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq5005 255 9e-66 seq2174 167 4e-39 >seq5005 Length=1206 Score = 255 bits (282), Expect = 9e-66 Identities = 198/229 (86%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 999 GTACAAAGGGCAGGGACGTAATCAACGCATGCT-GATGACATGCGCTTACTAGGCATT-C 942 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||| | |||||| Sbjct 941 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTAACAAGATT 882 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||| | | ||||| || | ||||||||||||||||||| Sbjct 881 ACCCAGACCTTTCGGTCAAGGA-AGA-ACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCG 824 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 823 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 775 >seq2174 Length=10963 Score = 167 bits (184), Expect = 4e-39 Identities = 177/226 (78%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| ||||| || ||||||||| |||||| |||||| | Sbjct 7463 GTACAAAGGGCAGGGACGTAATCAATGCGAG-TTAATGACTCGCACTTACTGGGAATT-C 7406 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 | ||| | | |||| || || | | ||||| | || || | |||| | || Sbjct 7405 CAGGTTCATGTG-AACAGTTTCAGTTCACAATCCCAAGCAAGAAGGTGGTTCAGCGGTTT 7347 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| |||||| ||| ||| || ||||| | ||| |||||||||||||| Sbjct 7346 ACCCGGACCTCTCGGCCTAGGAAATACAC--GTTGATACCTTCATTGTAGCGCGCGTGCA 7289 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 7288 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 7244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751821699625