Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq5005 499 6e-139 seq2174 158 2e-36 seq6748 140 6e-31 >seq5005 Length=1206 Score = 499 bits (552), Expect = 6e-139 Identities = 299/314 (95%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 |||||||||||||||||||| |||||||| || ||||||||||||||||||||| ||||| Sbjct 43 TGGTCCGGCCGGGCCTTTCCCTCTGGGGAGCCACATGCCCTTCACTGGGTGTGCTGGGGA 102 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 162 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 163 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 222 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 223 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAAGCGTCAGAGGTGAAATTCTTGG 282 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||| |||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 283 ATTGCTTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAGTGA 342 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 343 ACGAAAGTTAGGGG 356 >seq2174 Length=10963 Score = 158 bits (174), Expect = 2e-36 Identities = 191/252 (76%), Gaps = 10/252 (4%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT---GCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | | || ||||| || |||| Sbjct 6464 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTGTAATGCCTGAATATTTTGTGCAT 6523 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC--GCCGTAAT 187 |||||||| |||||||| | | |||||| ||| ||||||| | |||| | ||||| Sbjct 6524 GGAATAATGAAATAGGACAT-CTGTTCTACTTTCATTGGTTTTTTAGACCAAGATGTAAT 6582 Query 188 GATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 ||||||| | ||| ||||| | |||||| | | ||||||||||||||| || Sbjct 6583 GATTAATGGAAGCAGTTGGGGGCATTAGTATTACAACGCGAGAGGTGAAATTCTTAGACC 6642 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA-TTAATCAGTGAAC 306 | ||||||||||| |||||||| || |||| |||||||||| ||||||| |||| Sbjct 6643 GTTGTAAGACTAACTAAAGCGAAAGCATTTGCCAAAGATGTTTTCATTTAATCA-AGAAC 6701 Query 307 GAAAGTTAGGGG 318 ||||||||| || Sbjct 6702 GAAAGTTAGAGG 6713 >seq6748 Length=574 Score = 140 bits (154), Expect = 6e-31 Identities = 191/255 (75%), Gaps = 14/255 (5%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT---GCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | | || ||||| || |||| Sbjct 277 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCTAATGCCTGAATATTTTGTGCAT 336 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAG-GACC--GCCGTAA 186 |||||||| |||||||| | | |||||| ||| ||||||| | || | | |||| Sbjct 337 GGAATAATGTAATAGGACAT-CTGTTCTACTTTCATTGGTTTTTTTAGATCAAGATGTAA 395 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA- 245 |||||||| | | | | ||||| | |||||| | | ||||||||||||||| || Sbjct 396 TGATTAATGGAGGCAATTGGGGGCATTAGTATTACAACGCGAGAGGTGAAATTCTTAGAC 455 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA--TTAATCAGTG 303 || | ||||||||||| |||||||| || |||| | |||||||| ||||||| | Sbjct 456 CGTAGT-AAGACTAACTAAAGCGAAAGCATTTGCCAAAGGTGTTTTCATTTTAATCA-AG 513 Query 304 AACGAAAGTTAGGGG 318 |||||||||||| || Sbjct 514 AACGAAAGTTAGAGG 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914976004800