Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq23030 497 4e-138 seq23789 455 1e-125 seq2174 138 5e-30 seq5136 127 9e-27 seq3331 109 2e-21 >seq23030 Length=755 Score = 497 bits (550), Expect = 4e-138 Identities = 302/319 (95%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 362 GAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACA 421 |||||||||||| |||||||||||||||||||||||| |||| | |||||||||| |||| Sbjct 35 GAGGTCCGCGCTTCGGCTAGGATGCTGGCGTAATGGTCGTAATCCGCCCGTCTTGAAACA 94 Query 422 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGA 481 ||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| Sbjct 95 CGGACCAAGGAGTCTAACATCTATGCGAGTGTTCGGGTGTCAAACCCCTACGCGTAATGA 154 Query 482 AAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA 541 ||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||| Sbjct 155 AAGTGAACGGAGGTGAGAACCGC--AAGGTGCATCATCGACCGATCCTGATGTCTTCGGA 212 Query 542 TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 601 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 213 TGGATTTGAGTATGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAG 272 Query 602 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 273 GGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCG 332 Query 662 TCAAATTTGGGTATAGGGG 680 ||||||||||||||||||| Sbjct 333 TCAAATTTGGGTATAGGGG 351 >seq23789 Length=654 Score = 455 bits (504), Expect = 1e-125 Identities = 341/395 (86%), Gaps = 4/395 (1%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 262 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 321 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 381 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 382 AGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGAC 441 Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCG-GCCGGTGCACTCTTCTGCGGTCAGG 266 |||||| || ||| | | ||| |||| | ||| ||||||| ||| | |||| | || Sbjct 442 CAGACTCGCTCGC-GGGGTTCAGCCGG-CATTCGTGCCGGTGTACTTCCCCGCGGGCGGG 499 Query 267 CCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTG 326 ||||| || | | |||||||||| |||||||| |||| || | ||| | |||| || Sbjct 500 CCAGCGTCGGTTTGGGCGGTCGGTCAAAGGCCCTCGGAAGGTAACGCCCCTAGGGGCGTC 559 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGCTAGGATGC 386 |||||||| ||||| |||||| || |||| ||| |||| |||||| ||||| ||| || Sbjct 560 TTATAGCCGAGGGTGCAATGCGACCTGCCTAGACCGAGGAACGCGCTTCGGCTCGGACGC 619 Query 387 TGGCGTAATGGTTGT-AAGCGGCCCGTCTTGGAAC 420 |||| ||||||| || || || ||||||||| ||| Sbjct 620 TGGCATAATGGTCGTAAAACGACCCGTCTTGAAAC 654 >seq2174 Length=10963 Score = 138 bits (152), Expect = 5e-30 Identities = 108/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| ||||| || |||||||| Sbjct 9335 GAGCATACATGCTGTGACCCGAAAGATGGTGAACTATACCTGATCAGATCGAAGCCAGGA 9394 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||| ||||||||||| ||| | | |||||| ||||||||||||| |||| | ||||||| Sbjct 9395 GAAATTCTGGTGGAGGATCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGGGTA 9454 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 9455 TAGGGGCGA 9463 Score = 127 bits (140), Expect = 9e-27 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| | || |||||| | | ||||| ||||||| Sbjct 8640 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTTGGTGGTAAACTCCATCTAAGGCTAAAT 8699 Query 100 ATTGGCCAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| | ||||||||||| ||||||| |||| ||||| ||||||||||| || | Sbjct 8700 AT-GACCACAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAA 8758 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 8759 TAGAGAGTTAAATAGTACGTGAAA 8782 >seq5136 Length=525 Score = 127 bits (140), Expect = 9e-27 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 349 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 290 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| || |||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 289 AT-GACCACGAAACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTCTGAA 231 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 230 TAGAGAGTTAAATAGTACGTGAAA 207 >seq3331 Length=624 Score = 109 bits (120), Expect = 2e-21 Identities = 94/115 (82%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | || || |||||||||||||||||||||| ||||| ||| ||||| ||| | Sbjct 510 GAGCACATATGCTGTGACCCGAAAGATGGTGAACTATACCTGATCAGGTTGAAGTCAGGG 569 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA-AATT 668 ||||| ||| |||| | || ||| |||||| ||||||||||||| |||| |||| Sbjct 570 GAAACCCTGATGGAAGACCGAAGCAGTTCTGACGTGCAAATCGATTGTCAGAATT 624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079475011250