Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq17783 104 2e-20 seq20575 75.2 1e-11 >seq17783 Length=17731 Score = 104 bits (114), Expect = 2e-20 Identities = 141/191 (74%), Gaps = 12/191 (6%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || ||||||||||| Sbjct 17288 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGC 17229 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC-GATAT 119 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| | || Sbjct 17228 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCCAT 17169 Query 120 -ATTGGA--GATATATCATAACG-----CTAG--GCGTTAGGCGAACGTGGGGAACTGAA 169 || || | ||| | || | ||| || |||||||| ||||||||||| Sbjct 17168 CATAAGATGGTTATCTTGTACTGAATACATAGGTGCAAGAGGCGAACCAGGGGAACTGAA 17109 Query 170 ACATCTAAGTA 180 ||||||||||| Sbjct 17108 ACATCTAAGTA 17098 >seq20575 Length=672 Score = 75.2 bits (82), Expect = 1e-11 Identities = 85/113 (75%), Gaps = 7/113 (6%) Strand=Plus/Minus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||||||||||| ||| || ||||||| |||||||||| ||| ||||||||||| ||| Sbjct 151 ACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGAAAAGCGACG 92 Query 66 GGGATTGGCACATACGAA----TTGATCCGTAGATATCCGAATGGGGCAACCC 114 | | | ||| ||| | | |||| ||| ||||||||||| ||||| Sbjct 91 G---TAAGGTGATATGAACCGCTACAGCCGTCGATGTCCGAATGGGGAAACCC 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476686949975