Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq17783 636 4e-180 seq2174 73.4 1e-10 >seq17783 Length=17731 Score = 636 bits (704), Expect = 4e-180 Identities = 402/419 (96%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | Sbjct 16537 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTCA 16594 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || |||||| |||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 16595 GT-GTTACCTAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 16649 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 16650 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 16708 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 16709 GCTC-GCCACTGAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCTAACA 16766 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16767 AAGTGG-CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 16825 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16826 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 16885 Query 363 GCCTTGGAGGATGGT-CCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 16886 GCCTTGGAGGATGGTCCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 16944 >seq2174 Length=10963 Score = 73.4 bits (80), Expect = 1e-10 Identities = 77/100 (77%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | |||||| |||| | | | | | || |||||| ||||||||||||||| Sbjct 8785 CGGTTTCACGTACTATTTAACTCTC-TATTCAGAGTGCTTTTCAACTTTCCCTCACGGTA 8727 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 || |||| ||||||||| || ||||||||||| || Sbjct 8726 CTTGTTCGCTATCGGTCTTGTGGTCATATTTAGCCTTAGA 8687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241296118400