Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq17783 192 1e-46 seq12745 176 1e-41 >seq17783 Length=17731 Score = 192 bits (212), Expect = 1e-46 Identities = 290/403 (72%), Gaps = 11/403 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || ||| | | Sbjct 15941 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 16000 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA--CGCTACTCATGCC 118 | |||| |||||| |||||| ||| || ||| || || || |||||||| | Sbjct 16001 CAGGAAACCTTGGTCTTTCGGCGTG-GGGTTTTTCACTCG-CATTGTCGTTACTCATGTC 16058 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 16059 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 16116 Query 177 CGACGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||| ||||| | ||| |||| || |||||||| | || || |||| Sbjct 16117 GAACGCTCCTCTACCGCATCACTAAGGTGATACCCGTAGCTTCGGTGTATGGTTTGAGCC 16176 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| Sbjct 16177 CCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGG 16236 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| | Sbjct 16237 TGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTTAA 16296 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || |||| ||| |||||||||| | |||||| ||||||||| Sbjct 16297 CCATAACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 16339 >seq12745 Length=515 Score = 176 bits (194), Expect = 1e-41 Identities = 118/132 (89%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||||||| | ||| ||| Sbjct 161 CGACTACGCCTGTCGGCCTCGCCTTAGGCCCCGACTAACCCAGGGCAGATTAGCTTAACC 102 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 |||||||||||| | |||||||||||| ||| ||||||||| ||||||||||||||| Sbjct 101 CTGGAACCCTTGATCATTCGGCGGACGGGTTTCTCACCCGTCATTCGCTACTCATGCCTG 42 Query 121 CATTCTCACTCG 132 |||||||||||| Sbjct 41 CATTCTCACTCG 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177311782400