Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq5005 280 2e-73 seq2174 73.4 4e-11 >seq5005 Length=1206 Score = 280 bits (310), Expect = 2e-73 Identities = 175/187 (94%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 100 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 159 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 160 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 218 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||||| |||| ||||||||||| Sbjct 219 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAAGCGTCAGAGGTGAAATTC 278 Query 181 TTGGATT 187 ||||||| Sbjct 279 TTGGATT 285 >seq2174 Length=10963 Score = 73.4 bits (80), Expect = 4e-11 Identities = 129/180 (72%), Gaps = 11/180 (6%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT---GCTCGAATACATTAC-CAT 69 |||||||||| ||||||||| | | ||||||||| | | || ||||| || ||| Sbjct 6464 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTGTAATGCCTGAATATTTTGTGCAT 6523 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTA-TTTTGTAGGTTTCTAGGACC-GCCCGTAAT 127 |||||||| |||||||| | | |||||| ||| | ||||| | |||| ||||| Sbjct 6524 GGAATAATGAAATAGGACAT-CTGTTCTACTTTCATTGGTTTTTTAGACCAAGATGTAAT 6582 Query 128 GATAAATACGGA--TAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| ||| ||| ||| ||||| | |||||| | | | ||||||||||||| || Sbjct 6583 GATTAAT--GGAAGCAGTTGGGGGCATTAGTATTACAACGCGAGAGGTGAAATTCTTAGA 6640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511878604000