Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01002062.1 Length=351 Score E Sequences producing significant alignments: (Bits) Value seq6661 122 2e-25 >seq6661 Length=683 Score = 122 bits (134), Expect = 2e-25 Identities = 187/261 (72%), Gaps = 18/261 (7%) Strand=Plus/Plus Query 105 TTGAAGCGCCCGTAGAACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATC 164 || ||||||||| |||||| | ||||||| ||||| | | ||| | ||||| | Sbjct 2 TTAAAGCGCCCGATGAACTCGTGATAGGCCCAGACGCCGGCAATGGCGAGCAGGACGACC 61 Query 165 AGCGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGGGTT---GGTGTCTTTGGGTTGT 221 | || ||| | | ||||||||| ||||||||||||||||| |||||| ||| ||| Sbjct 62 ACGGCGAGGGCCAGCAGCATCACCTTGCGTTTGCGCGGGTTGCCGGTGTC-CGGGGGTGT 120 Query 222 TCGGTC----GCGTTGGTGCTTTCGGCAGTGGCCATGACAAATACCTCAAATTATTCCGT 277 | ||| || | |||| ||||||||||||||||||||||||||| ||||| | || Sbjct 121 T--GTCTTGAGCTTGGGTGTTTTCGGCAGTGGCCATGACAAATACCTTGAATTA-TGGGT 177 Query 278 GCG-TGTTGCGGG------GGTGGTCGCGGCCACGCTGTTGGCGTGATACCCGCCACCCA 330 ||| | ||||| | |||| || || | | | | ||| | ||||| |||| Sbjct 178 GCGACGAGGCGGGGCTGGCGTTGGTTGCATTCAGGTTTTCACCCTGAAAGCCGCCGCCCA 237 Query 331 GGGCCTGCATCAATTGAATCG 351 | || ||||||| |||||||| Sbjct 238 GCGCTTGCATCAGTTGAATCG 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1020550159200