Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq19515 868 0.0 seq23594 172 2e-40 seq2174 168 2e-39 seq28 95.1 4e-17 seq15962 84.2 7e-14 >seq19515 Length=912 Score = 868 bits (962), Expect = 0.0 Identities = 515/537 (96%), Gaps = 3/537 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 328 CTTTTGCTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 387 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 388 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 447 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||| Sbjct 448 AGCCCGCGAAGGACTTTAATGCAAGAAAATGGTCGATGAAGACCAGTTCCGCTTCATTGA 507 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||||||||||||||||||||||| |||||||| |||||||| || Sbjct 508 TTAAGTAAAAAAACGATAAGGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACCTA 564 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 565 TTCTACACCTCCTATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 624 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 684 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 744 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 804 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 805 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCATTTTCTG 861 >seq23594 Length=380452 Score = 172 bits (190), Expect = 2e-40 Identities = 167/213 (78%), Gaps = 14/213 (7%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT--TGC----- 226 ||| | |||| | ||||||| |||| ||||| |||||||||||||| | || Sbjct 367034 TCCACCTCATCAAGTAAGTAAGGAAACAATAAGAGTAGTGGTATTTCATTGTTGATTAAG 366975 Query 227 ---GCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 || ||| |||||||||||||||||||||| | ||| | ||| | | || || Sbjct 366974 ATTGCTCAAAAT-CTCCCACTTATTCTACACCTCTTATGTCTCCTTACAGTGCCAGATTA 366916 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 366915 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTATTCCAAGCCAATTCCCTTGGCT 366856 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 |||||||||||||||||||||||| |||||| Sbjct 366855 GTGGTTTCGCTAGATAGTAGATAG---CAGTGG 366826 Score = 127 bits (140), Expect = 7e-27 Identities = 72/73 (99%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 356726 GTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 356667 Query 420 AGGCATTTGGCTA 432 ||||||||||||| Sbjct 356666 AGGCATTTGGCTA 356654 >seq2174 Length=10963 Score = 168 bits (186), Expect = 2e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 10963 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTTGAATTTCTTCACTT 10904 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||| ||||||| Sbjct 10903 TGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 10863 Score = 89.7 bits (98), Expect = 2e-15 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 448 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 389 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| | |||||| ||||||||| ||||||||||||||| || |||| Sbjct 388 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCAGTGTC 342 >seq28 Length=2173237 Score = 95.1 bits (104), Expect = 4e-17 Identities = 71/81 (88%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCC--GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACT 491 || ||||||| |||| ||| |||| |||||||||||||||||| |||||||||||||| Sbjct 2025643 CTCAAGAGAGACATAATTATTCCCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACG 2025702 Query 492 TTGACATTCAGAGCACTGGGC 512 ||||||||||| || |||||| Sbjct 2025703 TTGACATTCAGGGC-CTGGGC 2025722 >seq15962 Length=1004 Score = 84.2 bits (92), Expect = 7e-14 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||| | | ||||||| | | |||| |||| |||||||| |||||| Sbjct 278 CTTTTGCTCTATGTGTGGTTTCTGTCCGCACTGAGCTGGCCTTGGGACACCTCCGTTATT 219 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||| | |||||| ||||||||| ||||||||||||||| Sbjct 218 ATTTGAGAGATGTACCGCCCCAGTCAAACTCCCCACCTG 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634799784800