Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq18687 109 1e-19 >seq18687 Length=1155 Score = 109 bits (120), Expect = 1e-19 Identities = 287/419 (68%), Gaps = 33/419 (8%) Strand=Plus/Minus Query 22380 CCATCGAGGACGACAGCTACGGCGTCTACAAACCGATCATCGCGCAGATGGGGCAGGACG 22439 ||||||| |||||| |||||||||||| ||| | |||| ||||||| | | | Sbjct 1059 CCATCGAAGACGACGAAATCGGCGTCTACAAGCCGCTGTTCGCCGAGATGGGTCGAGCCT 1000 Query 22440 CCAAAGAACATCCCGATGAGCTGGTGTGGGGCCTG-TGGAAGCAAGGCT-TCAACGCTGT 22497 ||| | || ||||| || ||||||| |||||| || |||| | || | |||| | Sbjct 999 CCAGCGCCCACCCCGACGAACTGGTGTTTGGCCTGCTGAAAGCCGGACTGACTACGCAG- 941 Query 22498 TTGCTACGACGGTCAGTATTTCTTCGATACCGACCACCCCGTC-ATCAAGCCGGGCGGCG 22556 ||||||||||| || | |||||||| |||| ||||| ||| | | || | || || Sbjct 940 -TGCTACGACGGCCAAAACTTCTTCGACGCCGATCACCCTGTCTACCCAG-AGACCGACG 883 Query 22557 GCACC---ACCTCCGTGTC------CAACTTCCAGGGGGGCACCGGTCCCGCCTGGTTCC 22607 ||||| || | || || ||||| | | | |||||||| || ||||||| | Sbjct 882 GCACCGGTACTGCTGTATCGGTCAGCAACTACAAAGACGGCACCGGCCCGGCCTGGTATC 823 Query 22608 TGTTGGATACCA--CGCGCATGGTCAAGCCGATGATTCACCAG----GTGCGCAAGCCGT 22661 || | ||| || |||||| |||||||||| || |||| || ||||| | Sbjct 822 TGCTCGATGTCAGTCGCGCA--ATCAAGCCGATCATCTTCCAGACCCGT-CGCAA---CT 769 Query 22662 ACACCTTCGTGTCCATGGACAAGGA-GGACGACGAAAACGTGTTCAACCGCAAGGAATTC 22720 | || || | || ||| || | |||||| || | ||||||| ||| | || | | Sbjct 768 ATGCCCTCAAAGCAAT-GACCAGCATGGACGATGAGCAGGTGTTCATGCGCGACGAGTAC 710 Query 22721 ATCTACGGCGTGGACGCCCG-GTCGAACGTCGGCTTTGGGCTT-TGGCAACTGGCCTAC 22777 ||| ||||| |||||||| ||| || || || ||| ||||| |||||| | |||||| Sbjct 709 CGCTATGGCGTCGACGCCCGCGTC-AATGT-GGGTTTCGGCTTCTGGCAATTCGCCTAC 653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134050628114850