Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1413 196 7e-48 seq378 194 3e-47 seq377 188 1e-45 seq1117 185 1e-44 seq1592 167 4e-39 seq217 161 1e-37 >seq1413 Length=13777 Score = 196 bits (216), Expect = 7e-48 Identities = 204/258 (79%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 || ||||||||||||||||| ||||||||||||| |||||||||| ||||| |||||| | Sbjct 2272 GTGCAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGTTTACTGGGAATT-C 2329 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | |||| | || Sbjct 2330 CTCGTTCATGGGGAATAATTTCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 2389 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| ||| |||||| | || |||||| | | ||||||||||| ||||||| Sbjct 2390 ACCCGGACCTTTCGACCAAGGAAA---ACACGTTGATTCCTTCAGTGTAGCGTGCGTGCG 2446 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||||||||||||||||||||| |||||||||||||| |||| || |||| | ||| | Sbjct 2447 GCCCAGAACATCTAAGGGCATCGCAGACCTGTTATTG-TTCAATCT--CGTGCGACTAGA 2503 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 2504 AGCCGCTTGTCCCTCTAA 2521 >seq378 Length=21700 Score = 194 bits (214), Expect = 3e-47 Identities = 182/226 (81%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||| ||||| |||| ||| Sbjct 3664 GTACAAAGGGCAGGGACGTATTCAACGCGAGCTT-ATGACTCGCGTTTACT-GGAAATTC 3607 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || |||| ||| | ||||| | |||| | | |||| | || Sbjct 3606 CTTGTTCATGGGGAATAATTTCAAGCCCCAATCCCTAGTACGAAGGAGGTTCAGCGGGTT 3547 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| ||||||| || | || |||||| | | ||||||||||||||||||| Sbjct 3546 ACCCGGACCTTTCGGCCAGGGAAA---ACACGTTGATTCCTTCAGTGTAGCGCGCGTGCG 3490 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||| ||||||||||||||||||||||||||| ||| ||||| || Sbjct 3489 GCCCAAAACATCTAAGGGCATCACAGACCTGTTTTTG-CTCAATCT 3445 >seq377 Length=24110 Score = 188 bits (208), Expect = 1e-45 Identities = 203/258 (79%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||||||||| |||| |||||||| ||| |||||| |||| |||||| | Sbjct 9196 GTAAAAAGGGCAGGGACGTAATCAATGCGAGCTT-ATGCCTCGCGTATACTGGGAATT-C 9253 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || |||| ||| | ||||| | ||||| | | |||| || || Sbjct 9254 CTTGTTCACGGG-AATAATTTCAAGCTCCAATCCCTAGCACGAAGGAGGTTCAGAGGGTT 9312 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||||||| ||||||| || | || |||||| | | || |||||||||||||||| Sbjct 9313 ACCCGGACCTCTCGGCCAGGGAAA---ACACGTTGATTCCTTCGGTGTAGCGCGCGTGCG 9369 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| || |||| | ||| | Sbjct 9370 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGACTAGA 9426 Query 239 AGGC-CATCTCCCTCGAA 255 || | | | |||||| || Sbjct 9427 AGCCGCTTGTCCCTCTAA 9444 >seq1117 Length=638 Score = 185 bits (204), Expect = 1e-44 Identities = 185/236 (78%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| |||||||| ||| |||||| ||||| |||||| | Sbjct 579 GTACAAAGGGCAGGGACGTAATCAATGCGAGCTT-ATGCCTCGCGTTTACTGGGAATT-C 522 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA--- 117 |||||| | | || |||| ||| | ||||| | ||||| | | |||| || Sbjct 521 CTCGTTCACGGG-AATAATTTCAAGCTCCAATCCCTAGCACGAAGGAGGTTCAGAGGGTT 463 Query 118 --------TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAG 169 |||||||||||| ||||||| || | || |||||| | | ||||||||| Sbjct 462 ACAGCGGGTTACCCGGACCTTTCGGCCAGGGAAA---ACACGTTGATTCCTTCAGTGTAG 406 Query 170 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 405 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 351 >seq1592 Length=9461 Score = 167 bits (184), Expect = 4e-39 Identities = 176/226 (78%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||| |||| ||| | ||||||||||| |||||| || ||||| |||||| | Sbjct 6054 GTACAAATGGCTGGGAAGTAATTAACGCGAGCTTT-TGACTCACGTTTACTGGGAATT-C 6111 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | ||| ||||||| ||| | || | | ||||| | |||| | || Sbjct 6112 CTCGTTCATGACGAACAATTTCAAGCCCCAATTCGTAGCACGAAGGCGGTTCAGTGTGTT 6171 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||||||| ||||||| || | || |||||| | | |||||||||| |||||||| Sbjct 6172 GCTCGGACCTTTCGGCCAGGGAAA---ACACGTTGATTTCTTCAGTGTAGCACGCGTGCG 6228 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||||||||||||| ||||||||| ||||| || Sbjct 6229 GCCCAGAACATCTAAGGGCATCACAGATCTGTTATTG-CTCAATCT 6273 >seq217 Length=10616 Score = 161 bits (178), Expect = 1e-37 Identities = 200/265 (75%), Gaps = 18/265 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTA-------CTAG 53 |||||||||||||| ||||| ||||||||| || |||||||||| ||| || | Sbjct 8349 GTACAAAGGGCAGGAACGTAATCAACGCGACCTC-ATGACTCGCGTTTAGCGTTTACTGG 8291 Query 54 GAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA 113 ||||| ||||||| | | || |||| ||| | ||||| | ||||| | | |||| Sbjct 8290 GAATT-CCTCGTTCATGGGGAATAATTTCAAGCCCCAATCCCTAGCACGAAGGAGGTTCA 8232 Query 114 AAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGC 172 | |||||||||||| |||| || || | || |||||| | | |||| ||||||| Sbjct 8231 GCGGGTTACCCGGACCTTTCGGTCAGGGAAA---ACACGTTGATTCCTTCAGCGTAGCGC 8175 Query 173 GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG- 231 |||||| |||||||| || ||||||||||||||||||||||||| ||||| || |||| Sbjct 8174 GCGTGCAGCCCAGAATATTTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGC 8118 Query 232 GCCTAAAAGGC-CATCTCCCTCGAA 255 | ||| ||| | | | |||||| || Sbjct 8117 GACTAGAAGCCGCTTGTCCCTCTAA 8093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751954352190