Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq545 331 2e-88 seq1273 329 6e-88 seq1346 320 3e-85 seq47 293 4e-77 seq2230 214 3e-53 seq647 183 5e-44 seq2356 145 1e-32 seq3640 114 2e-23 seq1112 111 3e-22 >seq545 Length=16465 Score = 331 bits (366), Expect = 2e-88 Identities = 228/256 (89%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 5988 ACAGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTC 6047 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| || | ||||||||||||| |||||| |||||||||||||| ||||||||||||| Sbjct 6048 CCTGTTGGCGGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAG 6107 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 6108 CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 6167 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||| ||||||| || ||| ||| | | | |||||||| Sbjct 6168 ATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATC 6225 Query 265 GATAGGCCACACTTTC 280 |||||||| ||||| Sbjct 6226 GATAGGCCGTGCTTTC 6241 >seq1273 Length=5870 Score = 329 bits (364), Expect = 6e-88 Identities = 223/248 (90%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 5796 ACAGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTC 5737 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| || | ||||||||||||| |||||| |||||||||||||| ||||||||||||| Sbjct 5736 CCTGTTGGCGGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAG 5677 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 5676 CCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTT 5617 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||| ||||||| || ||| ||| | | | |||||||| Sbjct 5616 ATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATC 5559 Query 265 GATAGGCC 272 |||||||| Sbjct 5558 GATAGGCC 5551 >seq1346 Length=13743 Score = 320 bits (354), Expect = 3e-85 Identities = 243/284 (86%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG--GTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||| ||| | ||||| || | |||| ||||||||||||||||||||||||||||| Sbjct 7461 TACTGAGCAGGATTACTATCGCAACGACACAGTCATCAGTAGGGTAAAACTAACCTGTCT 7402 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || |||||||||||||||||||||||||||| || | ||||||||||||| |||||| | Sbjct 7401 CACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGC 7342 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| Sbjct 7341 GAATTCTGCTTCGCAATGATAGGGAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT 7282 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| || Sbjct 7281 ATGAACGTTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTTACACCTCTTGC 7222 Query 239 CTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 7221 TGAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 7180 >seq47 Length=10076 Score = 293 bits (324), Expect = 4e-77 Identities = 216/250 (86%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| || Sbjct 7004 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCATGTTCCCTGTT 6945 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||| ||||| | |||||| ||||||||| |||| ||||||||||||||||||| Sbjct 6944 GGCGGGTGGACAATTCGACGCTTGGCGAATTCTGTTTCGCAATGATAGGAAGAGCCGACA 6885 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||| Sbjct 6884 TCGAAGGATCAAAAAGCGACGTCGCTATGAACGATTGGTCGCCACAAACCAGTTATCCCT 6825 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||| ||||||| || ||| ||| | | | |||||||||||||| Sbjct 6824 GTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGATAGG 6767 Query 271 CCACACTTTC 280 || ||||| Sbjct 6766 CCGTGCTTTC 6757 >seq2230 Length=572 Score = 214 bits (236), Expect = 3e-53 Identities = 176/212 (83%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 ||||||||||||||||||||| || | ||||||| ||||| | ||| ||||||||||| Sbjct 571 TAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAAGAATCCGATGCTGGGCGAATTCTGCT 512 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 | | ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 511 TTGCAATGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCAACGTCGCTATGAACACTT 452 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 ||| | |||||| ||||||||||||| |||||||||||| |||| | ||| ||| Sbjct 451 GGCCGTCACAAGTCAGTTATCCCTGTAGTAACTTTTCTG--ACCTGAAAACTC----TTC 398 Query 249 GAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | | | |||||||||||||||| ||||| Sbjct 397 AA--GCCAAAAGGATCGATAGGCCGTGCTTTC 368 >seq647 Length=54086 Score = 183 bits (202), Expect = 5e-44 Identities = 154/189 (81%), Gaps = 15/189 (8%) Strand=Plus/Plus Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| || | ||||||||||||| |||||| |||||||||||||| ||||||||||||| Sbjct 28854 CCTGTTGGCGGGTGAACAATCCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAG 28913 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||| ||||||||||||| ||||| ||||||| |||||| Sbjct 28914 CCGACATCGAAGGAT-----------GTCGCTATGAACGTTTGGCCGCCACAAACCAGTT 28962 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||| ||||||| || ||| ||| | | | |||||||| Sbjct 28963 ATCCCTGTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATC 29020 Query 265 GATAGGCCA 273 ||||||||| Sbjct 29021 GATAGGCCA 29029 >seq2356 Length=3362 Score = 145 bits (160), Expect = 1e-32 Identities = 112/131 (85%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 3098 ATGGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCC 3039 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||| ||||||| || ||| ||| | | | ||||||||||||| Sbjct 3038 TGTGGTAACTTTTCTGACACCTCTTGCTGAAAACTCTTCAA--GCCAAAAGGATCGATAG 2981 Query 270 GCCACACTTTC 280 ||| ||||| Sbjct 2980 GCCGTGCTTTC 2970 >seq3640 Length=206 Score = 114 bits (126), Expect = 2e-23 Identities = 78/88 (89%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || || |||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 88 ACAGTTATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTTTAAACCCAGCTCACGTTC 29 Query 87 CCTATTAGTGGGTGAACAATCCAACGCT 114 ||| || | ||||||| ||||| | ||| Sbjct 28 CCTGTTGGCGGGTGAAGAATCCGATGCT 1 >seq1112 Length=3375 Score = 111 bits (122), Expect = 3e-22 Identities = 91/109 (83%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC 225 ||||||||||||||||||| |||||| | |||||| ||||||||||||| |||||||||| Sbjct 1245 AAGCAACGTCGCTATGAACACTTGGCCGTCACAAGTCAGTTATCCCTGTAGTAACTTTTC 1186 Query 226 TGGCACCTCTAGCCTCAAATT--TCGAGGGACTAAAGGATCGATAGGCC 272 || || |||| || ||| | || || || |||||||||||||||| Sbjct 1185 TGACATCTCTTGCTGAAAACTCTTCAAG--ACAAAAGGATCGATAGGCC 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854346463296