Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19] 6,266 sequences; 272,660,569 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1538 116 4e-24 seq1413 116 4e-24 seq378 116 4e-24 seq858 91.5 2e-16 seq217 87.8 2e-15 >seq1538 Length=665 Score = 116 bits (128), Expect = 4e-24 Identities = 139/183 (76%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATA-CATTA 65 || ||||||||||| ||||||||| | | ||||||||| ||| || ||||| | Sbjct 418 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATCTTCGCCTGAATATTCTGT 477 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 478 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 535 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 536 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 595 Query 184 GAT 186 ||| Sbjct 596 GAT 598 >seq1413 Length=13777 Score = 116 bits (128), Expect = 4e-24 Identities = 139/183 (76%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATA-CATTA 65 || ||||||||||| ||||||||| | | ||||||||| ||| || ||||| | Sbjct 3237 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATCTTCGCCTGAATATTCTGT 3178 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 3177 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 3120 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 3119 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 3060 Query 184 GAT 186 ||| Sbjct 3059 GAT 3057 >seq378 Length=21700 Score = 116 bits (128), Expect = 4e-24 Identities = 139/183 (76%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATA-CATTA 65 || ||||||||||| ||||||||| | | ||||||||| ||| || ||||| | Sbjct 2725 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTATCTTCGCCTGAATATTCTGT 2784 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 2785 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGG 2842 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 2843 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 2902 Query 184 GAT 186 ||| Sbjct 2903 GAT 2905 >seq858 Length=20491 Score = 91.5 bits (100), Expect = 2e-16 Identities = 126/171 (74%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 22 AAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACATTAC-CATGGAATAAT 77 |||||| ||| | | ||||||||| ||| || ||||| | ||||||||||| Sbjct 14759 AAAAAAAAGGAGTGCTTAAAGCAGGCTATCTTCGCCTGAATATTCTGTGCATGGAATAAT 14700 Query 78 AGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--GTAATGATAAATA 135 ||||||||| | |||||||||||||| ||||| | ||| | || |||||||| |||| Sbjct 14699 GGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACCCCGAGGTAATGATTAATA 14642 Query 136 CGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || ||||| | ||||| || | ||||||||||||||||| Sbjct 14641 GGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGAT 14591 >seq217 Length=10616 Score = 87.8 bits (96), Expect = 2e-15 Identities = 131/183 (72%), Gaps = 16/183 (9%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACA-TTA 65 || ||||||||||| ||||| ||| | | ||||||||| ||| || ||||| || Sbjct 7457 ACGTTTACTTTGAACAAATTCGAGTGCTTAAAGCAGGCTATCTTCGCCTGAATATTCTTT 7516 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC--G 123 |||||||||| ||||||||| |||||||| ||||| | ||| | || | Sbjct 7517 GTATGGAATAATGGAATAGGAC---------TATTTTGTTGGTTT-TCGGAACCCCGAGG 7566 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 7567 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 7626 Query 184 GAT 186 ||| Sbjct 7627 GAT 7629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511968920640