Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megachile_20rotundata_20[refseq_20GCF_5F000220905.1_202011-07-19]
6,266 sequences; 272,660,569 total letters
Query= NC_033778.1
Length=111453
Score E
Sequences producing significant alignments: (Bits) Value
seq665 123 2e-23
>seq665
Length=2298905
Score = 123 bits (136), Expect = 2e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 26029 ACATTTGAAACATGGCCAAAAGCAATGATGCGAATTAAAGAACAACTTTCAAATGCGGGt 26088
||||| ||||||||||||||| | ||| | | ||||||||| | || |||| |||
Sbjct 183038 ACATTCGAAACATGGCCAAAATCTATGCCACAGACAAAAGAACAATTAGCAGATGCTGGT 182979
Query 26089 tttttttATTCAGGAAATGGAGATAAAGTATTATGTTATCAATGTGGTGGTTCTATAAAT 26148
|||| |||| || || || || || ||||||||||| ||||| ||| ||||
Sbjct 182978 TTTTATTATATTGGTAAAGGTGACCAAACCTTATGTTATCACTGTGGAGGTGGCTTAAAG 182919
Query 26149 AATTTTGAATTACATGACGATCCATGGATACGACATGCAAAAGAATATCCAAATTGTTTA 26208
||| ||| | | || ||||||||| || |||||||||| | | | || ||||
Sbjct 182918 GATTGGGAACCAGAAGATGATCCATGGGAACAACATGCAAAATGGTTTTCTAAGTGTTAT 182859
Query 26209 TATGTATTTCTTGTTAAAGGACAAGATTATATAAATAGAAT 26249
||| |||| | ||| |||||||||||||| |||||| |||
Sbjct 182858 TATTTATTAATGGTTCAAGGACAAGATTATGTAAATAAAAT 182818
Score = 122 bits (134), Expect = 6e-23
Identities = 124/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 26370 TGATGATGGTAGAATATGTAAAATTTGTTATAATGAAGAAATCGGTGTTGTATTTTTACC 26429
|||||||| || || ||||||||||||||||||| |||| | || || |||||| ||||
Sbjct 182455 TGATGATGCAAGGATGTGTAAAATTTGTTATAATGGAGAATTAGGAGTGGTATTTCTACC 182396
Query 26430 GTGTGGTCATATTGTAGCATGTATTAAATGTGCACCCGGAATGATGAATTGTCCAGTCTG 26489
||||| ||||| || || ||| |||| ||||| || ||||||| | |||| |||| ||
Sbjct 182395 ATGTGGACATATAGTTGCTTGTGTTAAGTGTGCTCCTGGAATGACAACTTGTGCAGTATG 182336
Query 26490 TCGTAAACCAGTCAGCATGAATATACGAACATTCTTTTCATA 26531
| | | || || | |||| | | ||| | ||||| |||||
Sbjct 182335 TAGAGAGCCTGTTACTATGACTGTGCGAGCCTTCTTCTCATA 182294
Score = 107 bits (118), Expect = 1e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 25606 GCTGGATTGTATTATATTGGTGAAAATGATAGTGTTAAATGTTTTGAATGTAACGTTACT 25665
|||||||| ||||||| |||||| ||||| || | |||||||||||| | | |
Sbjct 183416 GCTGGATTTTATTATACAGGTGAAGGTGATAAAGTAAGGTGTTTTGAATGTCAAG-TGGA 183358
Query 25666 ATTATG-AAATGGGAAGAAGATGATGAACCTTTAGCATGTCATAAAAGATGGTCTGCAAG 25724
| |||| |||||| ||||| |||| | ||| | | |||| || | ||||| |||||
Sbjct 183357 AATATGCCAATGGGTAGAAGGTGATAACCCTATGGTTGATCATCAACGTTGGTCAGCAAG 183298
Query 25725 ATGTCGATTTATTAGAAAAATTGCTTGTGGAAATGTTCCAATAGGTATTGATCCAAATAC 25784
||| |||||||| | ||||| |||||| ||||| ||||| || | ||||| | |||
Sbjct 183297 GTGTAGATTTATTCGTAAAATGCATTGTGGTAATGTACCAATTGGAGTAGATCCCAGTAC 183238
Query 25785 AGT 25787
|||
Sbjct 183237 AGT 183235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356497573315164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |