Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq116385 268 7e-67 seq93051 221 1e-52 >seq116385 Length=1425 Score = 268 bits (296), Expect = 7e-67 Identities = 384/538 (71%), Gaps = 6/538 (1%) Strand=Plus/Plus Query 61106 AGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACT 61165 ||||||| ||||| |||||||| ||||||||||||||| | ||||| ||| |||| Sbjct 52 AGGCGGAGGCTTCGTTCTGGACTGTGGAGGAGGTCGATCTATCCAAGGACCAAGCCGACT 111 Query 61166 GGGAGC-GTTTA--TCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||||| ||| | || ||| || | || |||||| || || ||||| ||||| | Sbjct 112 GGGAGAAGTTGAATTC---CGGAGAGAAGCACTTCATTTCCCACGTTTTGGCTTTCTTCG 168 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 ||||||| || || || |||||||| || || ||||||||||| | ||||| || || Sbjct 169 CCGCTTCCGATGGCATTGTCAATGAAAACTTGGTGGAACGTTTCACCCAGGAAGTCCAGA 228 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 | | || || || |||||||| || ||||||||||| |||||||| ||||||||||| | Sbjct 229 TTACTGAAGCTCGCTGTTTCTATGGGTTCCAGATTGCTATGGAGAACGTCCACTCGGAAA 288 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCA 61402 |||||||| || | ||||| | |||||| | || | |||| | || | |||| Sbjct 289 TGTACAGTATTTTAATCGACTCTTACATCCGCGATCCACAGGAAAGAGACTTCCTCTTCA 348 Query 61403 ATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCA 61462 | || |||||| |||| |||||| ||| || || ||||| || |||||| Sbjct 349 ACGCTGTCGAGAATCTACCTTGTGTGAAGAAGAAGGCTGACTGGGCATTGTCTTGGATTG 408 Query 61463 CCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTAT 61522 ||||| | | || || |||| || || | | || ||||| | || || || | | Sbjct 409 GCAGTAAATCCGCCACCTTTGCCGAGAGAATCATTGCTTTTGCTGCCGTTGAAGGCATTT 468 Query 61523 TTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTC 61582 | ||||| ||| || ||||| ||||| ||||||||||| | || | ||||| ||| Sbjct 469 TCTTCAGCGGAAGTTTCGCCGCGATCTTCTGGTTGAAGAAGAGGGGTTTGATGCCTGGTT 528 Query 61583 TGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGT 61640 |||||||| |||||| | || || | ||||| || | || ||||| ||||| || Sbjct 529 TGACCTTCTCCAATGAACTTATCTCTAGGGACGAAGGACTCCACTGTGACTTTGCCGT 586 >seq93051 Length=3786 Score = 221 bits (244), Expect = 1e-52 Identities = 600/914 (66%), Gaps = 6/914 (1%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 ||||| | |||||||| || || || || ||||| | ||| || || ||||| ||||| Sbjct 2231 GATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTACTATTTCTGTGCAA 2172 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 ||||| ||||| |||||| || | || ||||||||||| || | ||| || ||||| Sbjct 2171 AGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCTATTACAAGCATCT 2112 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 || || | |||||| || || || || |||||||| ||||| || ||||| ||| | Sbjct 2111 TTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTATGGCAAACCACAAT 2052 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGT 66253 | || || | |||| || | || | ||||| | | ||||||| | Sbjct 2051 TGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCTTCTCGTATTTTACGTAGAGATTC 1992 Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 || || || ||||| || || || | |||||| || || |||||||||| ||| Sbjct 1991 TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATGGGGACACATCAATGAC 1932 Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 ||||| |||| |||||| || ||| |||| ||| || ||||| | || || || Sbjct 1931 CAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAATCCATAAAGCATAAAAT 1872 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAG 66433 ||||| | |||||| |||| || | || |||||| |||||| | || ||||| Sbjct 1871 AGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAAGTCTAAAAATTCAAAA 1812 Query 66434 ATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCT 66493 || || | ||||||||| || | || || || || | || | ||| ||||| Sbjct 1811 ATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGGTCTTTTATTTCCACCC 1752 Query 66494 TGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGAT 66553 || || || || || || || ||||| || | | ||| ||||| | |||||||| Sbjct 1751 TGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGGTACTAAACCGTTAGAA 1692 Query 66554 TTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCA 66613 ||||||| || || | || | | ||| || || || || ||||| | |||| Sbjct 1691 GTGCCATTAGTTCCTGCTATAGTAGTGCCTTTAGCACGAATGCAATGCACATTTATACCA 1632 Query 66614 ATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCA 66673 || || || || | ||| || || || || | | |||| || || || ||| Sbjct 1631 ATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGACTGATTTAAAGATTCCTTCA 1572 Query 66674 ATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCG 66733 || |||||| || || | ||| | || || ||||| || ||||| || Sbjct 1571 ATTGAGTCAGAGCACATTGTTAAGAGAAAACAGGATGATAGTTGAGGGCGAGGTGTAGCT 1512 Query 66734 GCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTA--ATGGCGAGACATGTAATTGTACG 66791 |||| ||| ||||| |||| ||| || |||| || | || | | | || || | Sbjct 1511 GCCGCGAACAGGGTAGGTGAAGCATGGATAAAATATCTTTCTGATAAAAG--GTTATATG 1454 Query 66792 TCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGA-GTGCACATCGCATCAGGAGG 66850 |||| || | | |||||| | | |||||||| || | | ||| || ||| || | | Sbjct 1453 TCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTACGGACAC-TCTCATAAGCATG 1395 Query 66851 TATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTC 66910 | ||| || | |||| | | | || || | || ||| || |||||||||| |||| Sbjct 1394 TGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATAAATAAGAGCGTTCCAAGGTC 1335 Query 66911 TTGATACCAAAGTA 66924 || | |||||||| Sbjct 1334 TTAAATCCAAAGTA 1321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396979875048560