Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq156590 376 7e-102 seq87595 136 1e-29 seq20361 105 2e-20 seq55536 95.1 4e-17 seq13647 87.8 5e-15 >seq156590 Length=576 Score = 376 bits (416), Expect = 7e-102 Identities = 353/439 (80%), Gaps = 18/439 (4%) Strand=Plus/Minus Query 80 AATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 139 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 576 AATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG 517 Query 140 AATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCG 199 ||||||||||| |||||||||||||||||| |||||||||| || || |||||||| Sbjct 516 AATCGAACCCTGATTCCCCGTTACCCGTTGCAACCATGGTAGTCCTAGATACTACCATCA 457 Query 200 AAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTT 259 | ||||||||||||||| ||||||| || | ||| ||| |||| |||| ||| || Sbjct 456 ATAGTTGATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACGA-TCTGC 398 Query 260 AAGTTAT-TA----TGAATCA-CCAAGGAGCCCCGAAGG--GCGTTGGTTTTTTATCTAA 311 ||||||| || | || || ||| || |||||| | || | | |||| |||| Sbjct 397 AAGTTATCTAGAGTTCAACCAGTCAACGATTCCCGAAAGAATCGCTTGGTTTTAGCCTAA 338 Query 312 TAAATACACCCCTTCCGAA--GTCGGGGTTTTTA--GCATGTATTAGCTCTAGAATTACC 367 |||| ||| | |||| || ||| | | || || |||||||||||||||||||||||| Sbjct 337 TAAAAGCACACGTTCCAAAAGGTCCGTGCTTATAATGCATGTATTAGCTCTAGAATTACC 278 Query 368 ACGGTTATCCATGTAGTAAGGT--ACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 || |||||||| ||| | || || ||| ||| ||| ||||||||| ||||||||| | Sbjct 277 ACAGTTATCCAAGTA--ACTGTTAACGATCTAATGAACCATAACTGATATAATGAGCCTT 220 Query 426 TCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACA 485 | || |||||||| | || | | | ||||||||||||||||||||||||||||||||| Sbjct 219 TTGCGGTTTCACT-TTTAATTCGTGTGTACTTAGACATGCATGGCTTAATCTTTGAGACA 161 Query 486 AGCATATGACTACTGGCAG 504 ||||||| ||||||||||| Sbjct 160 AGCATATAACTACTGGCAG 142 >seq87595 Length=375 Score = 136 bits (150), Expect = 1e-29 Identities = 105/124 (85%), Gaps = 3/124 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCC---AAAAGAGCCCTGTATCAGTATTTATTGTCACTA 57 |||||||||||||||||| | || | | ||| ||||||| ||||| | ||||||| Sbjct 124 GTACTCATTCCAATTACAGGGCCTCGGATACGAGTCCTGTATTGTTATTTTTCGTCACTA 65 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 |||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||| Sbjct 64 CCTCCCCGTGCTGGGAGTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCC 5 Query 118 GTTT 121 |||| Sbjct 4 GTTT 1 >seq20361 Length=27622 Score = 105 bits (116), Expect = 2e-20 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 |||| |||||||||||||||||| |||||||||| || || |||||||| | ||||| Sbjct 27016 CCCTGATTCCCCGTTACCCGTTGCAACCATGGTAGTCCTAGATACTACCATCAATAGTTG 27075 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 |||||||||| ||||||| || | ||| ||| |||| |||| |||| Sbjct 27076 ATAGGGCAGACATTTGAAAGATCTGTCGTCGGTACAAGACCATACGAT 27123 >seq55536 Length=14331 Score = 95.1 bits (104), Expect = 4e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 ||||||||| ||||||||||| |||||||||||||||||| | ||||||| || || Sbjct 686 CCCTCTCCGAAATCGAACCCTGATTCCCCGTTACCCGTTGCAGCTATGGTAGTCCTAGAT 627 Query 190 CCTACCATCGAAAGTTGATAGGGCA 214 |||||||| | ||||||||||||| Sbjct 626 ACTACCATCAATAGTTGATAGGGCA 602 >seq13647 Length=33068 Score = 87.8 bits (96), Expect = 5e-15 Identities = 84/107 (79%), Gaps = 7/107 (7%) Strand=Plus/Minus Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || || | |||| ||| |||||| | ||||| |||||||| ||||||||||||| Sbjct 14790 CCTGTATTGGGAGTGGTTAATTTACTCGCCTTTTGCCTTCC------GTGGTAGCCGTTT 14737 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTT 168 || | |||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 14736 CTTGGACTCCTTCTCCGGAATCGAA-CCTGATTCCACGTTATCCGTT 14691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1506910356736