Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26] 231,041 sequences; 489,347,612 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq54449 224 8e-54 >seq54449 Length=2482 Score = 224 bits (248), Expect = 8e-54 Identities = 560/847 (66%), Gaps = 10/847 (1%) Strand=Plus/Plus Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082 || || || || || || || ||||| | |||||| || ||||| ||||| |||||||| Sbjct 1300 TTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAGAGATTACTA 1359 Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142 || || || || | ||| |||||||||||||| | ||||| ||||| ||||||| | Sbjct 1360 CACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCTTTGTACAAC 1419 Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202 || || ||||| || || || ||||| |||||||| || || | ||| || | || Sbjct 1420 ATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGTTGTTGAGCT 1479 Query 66203 TTCACCGTACGTACCGC----CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258 || | | | || ||| | ||| | | | |||| ||||| | || || Sbjct 1480 TTTATTTTCCTGTTTGCTTTTCCTTCATTTTCATACTTAAT----ATAGAGTTTCTCAAA 1535 Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318 ||||||||| || ||| || | ||||| ||||| |||||||| || |||||||| Sbjct 1536 TTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGACCAATC 1595 Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378 | || || ||||| |||||| | ||| || ||||| | |||||||| ||||| Sbjct 1596 TTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAGAAAAGATC 1655 Query 66379 GCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGT 66437 | ||||| | ||| || | || ||| ||||| ||| || | || ||||| || | Sbjct 1656 TCTAGCTCGGTTCTCTTCTTTTCCTGTG-TTTTTCTTCAAATCCAAAAATTCAAAAATAT 1714 Query 66438 CGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGT 66497 | | |||||| ||||||| || || ||||| | || | ||| ||| ||||| | Sbjct 1715 CTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTCCTTGAT 1774 Query 66498 CGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGC 66557 | || || || || ||||| |||||||| | ||||| || || | || || || | | Sbjct 1775 CTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTGAAGTTC 1834 Query 66558 CATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATAC 66617 |||| || || | || | | ||| ||||| ||| ||| ||||| | || || | Sbjct 1835 CATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTACATTTAATCCGATTC 1894 Query 66618 CACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGG 66677 | || || | ||| || || |||||| | | || | | ||| || || || |||| Sbjct 1895 CGCCTGCAGACTTGGAAATCATAGCACATTGTTCAACGGACTTGAAGATCCCTTCTATGG 1954 Query 66678 AGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCG 66737 | || || || || || | |||||| | ||| || | |||||||| || | Sbjct 1955 AATCTGAGCACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCTTGGTGTGGCAGCAG 2014 Query 66738 AGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGA 66797 || | || || | ||||| |||| || ||| | ||| || ||||| | Sbjct 2015 CAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAGATTATATGTCTCAA 2074 Query 66798 TGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAG 66857 | | ||||| |||| | |||||||| || | || || ||| || | || ||||| Sbjct 2075 TAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCATAAGCATGTGTTGAG 2134 Query 66858 GCCGTTC 66864 | | ||| Sbjct 2135 GTCTTTC 2141 Score = 161 bits (178), Expect = 8e-35 Identities = 327/480 (68%), Gaps = 4/480 (1%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || ||||| || || ||||| ||||| | || || | | ||||||||| || || Sbjct 272 TCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCCTGTT 331 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || || || |||||| ||||||||||| || | ||||||| |||| || || || Sbjct 332 TTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGGTTCT 391 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 || ||||| ||||| || |||||||| ||||| || || ||| | ||| |||||||| Sbjct 392 GCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAGCCATT 451 Query 65258 TCAATGATACGACGT-CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316 | ||| || || | ||||| ||||| || || || || || | | | Sbjct 452 TGAATTGTA-GATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTGC 510 Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376 |||||| || || || || | |||||||| || |||||| || ||| Sbjct 511 TGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTTTTTCATATC 570 Query 65377 CTCTGACCACAAACCCAAATC-GATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435 || ||| ||| | | || | |||| ||| | ||| || | || | ||||||| Sbjct 571 ATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTG-AGCAAATGGTGGTTTACAACTTGGA 629 Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495 |||| || || | ||| |||||| ||| || || || || ||||| || |||||| Sbjct 630 ACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGATTCAT 689 Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555 |||| || | |||||| ||||| || ||||||||||| || || | ||| ||||| |||| Sbjct 690 TGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAATGAATTTC 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396448523180240