Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20scalaris_20[genbank_20GCA_5F000341915.2_202013-03-26]
231,041 sequences; 489,347,612 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq54449 224 8e-54
>seq54449
Length=2482
Score = 224 bits (248), Expect = 8e-54
Identities = 560/847 (66%), Gaps = 10/847 (1%)
Strand=Plus/Plus
Query 66023 TTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTG 66082
|| || || || || || || ||||| | |||||| || ||||| ||||| ||||||||
Sbjct 1300 TTACAAACGGCGATTTCATCTGGAGCAGAATACTCTACGATTTCAGTGCAGAGATTACTA 1359
Query 66083 CAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATC 66142
|| || || || | ||| |||||||||||||| | ||||| ||||| ||||||| |
Sbjct 1360 CACTTAATTGTACCAACATTTTGTTGATTACTCTTTCTGTTGCAAGCATCTTTGTACAAC 1419
Query 66143 ATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCC 66202
|| || ||||| || || || ||||| |||||||| || || | ||| || | ||
Sbjct 1420 ATATATGGAGTTCCAGTTTCTACTTGTGACTCAATAATTGCATACCAGAGTTGTTGAGCT 1479
Query 66203 TTCACCGTACGTACCGC----CCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAA 66258
|| | | | || ||| | ||| | | | |||| ||||| | || ||
Sbjct 1480 TTTATTTTCCTGTTTGCTTTTCCTTCATTTTCATACTTAAT----ATAGAGTTTCTCAAA 1535
Query 66259 GGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATC 66318
||||||||| || ||| || | ||||| ||||| |||||||| || ||||||||
Sbjct 1536 TTCTTCACCCCAAACATCGTGCAATCCGGGACATTTGTGAGGACACATAAGAGACCAATC 1595
Query 66319 ACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATC 66378
| || || ||||| |||||| | ||| || ||||| | |||||||| |||||
Sbjct 1596 TTCGTCAGCCTCAACACGTTTCATAAACAAATCTGGAATCCATAAAGCGTAGAAAAGATC 1655
Query 66379 GCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGT 66437
| ||||| | ||| || | || ||| ||||| ||| || | || ||||| || |
Sbjct 1656 TCTAGCTCGGTTCTCTTCTTTTCCTGTG-TTTTTCTTCAAATCCAAAAATTCAAAAATAT 1714
Query 66438 CGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGT 66497
| | |||||| ||||||| || || ||||| | || | ||| ||| ||||| |
Sbjct 1715 CTGAATGCCAAGGTTCCAAATAAATTGCGAATGCTCCAGGCCTCTTGTTGCCTCCTTGAT 1774
Query 66498 CGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGC 66557
| || || || || ||||| |||||||| | ||||| || || | || || || | |
Sbjct 1775 CTACATATCGGGCAACATTATTGAAGACTCTTAACATGGGAACTAAACCATTTGAAGTTC 1834
Query 66558 CATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATAC 66617
|||| || || | || | | ||| ||||| ||| ||| ||||| | || || |
Sbjct 1835 CATTAGTTCCAGCAATAGCTGTCCCTTTAGCCCGAATACAGTGTACATTTAATCCGATTC 1894
Query 66618 CACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGG 66677
| || || | ||| || || |||||| | | || | | ||| || || || ||||
Sbjct 1895 CGCCTGCAGACTTGGAAATCATAGCACATTGTTCAACGGACTTGAAGATCCCTTCTATGG 1954
Query 66678 AGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCG 66737
| || || || || || | |||||| | ||| || | |||||||| || |
Sbjct 1955 AATCTGAGCACATTGTTAGAAGAAAACATGAAGACAATTGAGGCCTTGGTGTGGCAGCAG 2014
Query 66738 AGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGA 66797
|| | || || | ||||| |||| || ||| | ||| || ||||| |
Sbjct 2015 CAAATAACGTTGGAGAGGCGTGAATAAAATACCTTTCAGATAAAAGATTATATGTCTCAA 2074
Query 66798 TGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAG 66857
| | ||||| |||| | |||||||| || | || || ||| || | || |||||
Sbjct 2075 TAGCTGCATCTATGTCGTTTCCATGAATTCCTACAGCGACTCTCATAAGCATGTGTTGAG 2134
Query 66858 GCCGTTC 66864
| | |||
Sbjct 2135 GTCTTTC 2141
Score = 161 bits (178), Expect = 8e-35
Identities = 327/480 (68%), Gaps = 4/480 (1%)
Strand=Plus/Plus
Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137
|| || ||||| || || ||||| ||||| | || || | | ||||||||| || ||
Sbjct 272 TCAACAGTGAATTGTATAGCATTGGCAGCGGGTTTTGTACGTAAATAGTACATTCCTGTT 331
Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197
|| || || |||||| ||||||||||| || | ||||||| |||| || || ||
Sbjct 332 TTCAGACCCAATTTCCAAGCGTAGAAATGCATTGAAGTTAATTTTCCATAGTTTGGTTCT 391
Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257
|| ||||| ||||| || |||||||| ||||| || || ||| | ||| ||||||||
Sbjct 392 GCTACATGAATATTGAATGACTGACTTTGATCAATAAAAGCACCTCTATCAGCAGCCATT 451
Query 65258 TCAATGATACGACGT-CCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAAT 65316
| ||| || || | ||||| ||||| || || || || || | | |
Sbjct 452 TGAATTGTA-GATTTAATGGATATTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTGC 510
Query 65317 TGGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGA 65376
|||||| || || || || | |||||||| || |||||| || |||
Sbjct 511 TGGAATTCTTTCGATTTCTTGTATAGAACCACGTTTTGAAATAATTTCGTTTTTCATATC 570
Query 65377 CTCTGACCACAAACCCAAATC-GATAAGATGTTGAACCAAGTGACGATTGATGACTTGGA 65435
|| ||| ||| | | || | |||| ||| | ||| || | || | |||||||
Sbjct 571 ATCGTCCCATAAATCAAGCTCTGTTAAGTCCTTG-AGCAAATGGTGGTTTACAACTTGGA 629
Query 65436 ACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAG 65495
|||| || || | ||| |||||| ||| || || || || ||||| || ||||||
Sbjct 630 ACTCACCAGATAATACTCGACGGTTATAAATATTTGAAGTATATGGTTCGAATGATTCAT 689
Query 65496 TGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTC 65555
|||| || | |||||| ||||| || ||||||||||| || || | ||| ||||| ||||
Sbjct 690 TGTTTCCCAAAATTTGAGCAGTTGAAGCAGTTGGCATTGGTGCAATCAATAATGAATTTC 749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396448523180240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |