Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq63 212 9e-53 seq297 206 4e-51 seq30 185 1e-44 seq119 147 3e-33 >seq63 Length=1487516 Score = 212 bits (234), Expect = 9e-53 Identities = 186/226 (82%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 381232 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 381175 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 381174 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 381115 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | ||||||||||||||||||| Sbjct 381114 ACCCGGGCCTTTCGGCCAGGGAAA---ACACGCTGATTCCTTCAGTGTAGCGCGCGTGCG 381058 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 381057 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 381013 >seq297 Length=283509 Score = 206 bits (228), Expect = 4e-51 Identities = 196/242 (81%), Gaps = 10/242 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 8636 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 8693 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 8694 CTCGTTCATGGGGAATAATTGCAAGCCCCAATCCCTAGCACGAAGGAGGTTCAGCGGGTT 8753 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| ||| ||||||| || | || || ||| | | |||||||||||||| |||| Sbjct 8754 ACCCGGGCCTTTCGGCCAGGGAAA---ACACGCTGATTCCTTCAGTGTAGCGCGCCTGCG 8810 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 ||||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||| | Sbjct 8811 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA--TCCCGTGCGGCTAGA 8867 Query 239 AG 240 || Sbjct 8868 AG 8869 >seq30 Length=830597 Score = 185 bits (204), Expect = 1e-44 Identities = 190/240 (79%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||| |||||||||||||||| ||||||||||||| |||| ||||||||||| |||||| | Sbjct 42765 GTAGAAAGGGCAGGGACGTATTCAACGCGAGCTT-ATGATTCGCGCTTACTTGGAATT-C 42822 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||||||| | ||||| | ||||| | | |||| | || Sbjct 42823 CTCGTTCATGGGGAATAATTGCAAGACACAATCCCTAACACGAAGGAGGTTCAGCGGGTT 42882 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || ||||||| || | || || ||| || || |||||||||||||||| Sbjct 42883 ACCCCGGACTTTCGGCCAGGGAAA---ACACGCTGATAACTTCCGTGTAGCGCGCGTGCG 42939 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAAA 238 |||||||| |||||||||||||||||||||||||||| ||||| || |||| | ||||| Sbjct 42940 GCCCAGAATATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT--CGTGCGGCTAAA 42996 >seq119 Length=715947 Score = 147 bits (162), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 15/226 (7%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| | ||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 9155 GTACAAAGGGCAGA-ATGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 9099 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | || |||||||| | ||||| | ||| | | | |||| | || Sbjct 9098 CTCATTCATAGGAAATAATTGCAAGCCCCAATCCCTAGCACAAAGGAGATTCAGCGGGTT 9039 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| ||||||| || | || || ||| ||||| ||| |||||| Sbjct 9038 ACCCGAACCTTTCGGCCAGGGAAA---ACGCGCTGAT-------GTGTAACGCACGTGCG 8989 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || |||||||||||||||||||||||||||||||||| ||||| || Sbjct 8988 GCACAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 8944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751979121190