Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq844 208 1e-51 seq30 196 9e-48 seq203 143 5e-32 seq347 102 1e-19 >seq844 Length=225 Score = 208 bits (230), Expect = 1e-51 Identities = 184/226 (81%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 89 TTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGA 147 |||||||| |||||||| |||| |||| | |||||||||||||| |||| | |||||| Sbjct 1 TTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGA 60 Query 148 CGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGG 207 | || | ||||| |||||| | ||| || ||||||||||| ||||| ||||||| Sbjct 61 TTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGG 119 Query 208 GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGC 267 || | ||||| || |||||||||||||||||||||||||| ||||| ||| ||||| Sbjct 120 GGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGC 179 Query 268 GAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||| || |||||||||||||||||||||| ||||||||||| Sbjct 180 GAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 224 >seq30 Length=830597 Score = 196 bits (216), Expect = 9e-48 Identities = 219/286 (77%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| |||||||| |||| || | ||| || ||||||||||| ||||||||||| | Sbjct 43620 TGCTCTTCACTGAGTGTCGAGGTGGGCCGATACGTTTACTTTGAACAAATTAGAGTGCTT 43561 Query 100 AAAGCAGGC---CTTTGCTCGAATACATTA-GCATGGAATAATAGAATAGGACGTGCGGT 155 ||||||||| ||| || |||||| | |||||||||||| ||||||||| | |||| Sbjct 43560 AAAGCAGGCTACCTTCGCCTGAATACTGTGTGCATGGAATAATGGAATAGGACCT-CGGT 43502 Query 156 TCTATTTTGTTGGTTTCTAGGACCGCCG---TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||||||||||||||| | ||| | ||| |||||||||||||||| || ||||| | Sbjct 43501 TCTATTTTGTTGGTTT-TCGGAGCCCCGAGGTAATGATTAATAGGGACAGATGGGGGCAT 43443 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || ||||||||||||||||||| ||||| || ||||||| Sbjct 43442 TCGTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACAGAAGCGAAAG 43383 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||| |||||||||||||||| ||||||||||||| || Sbjct 43382 CATTTGCCAAAAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 43338 >seq203 Length=273199 Score = 143 bits (158), Expect = 5e-32 Identities = 187/253 (74%), Gaps = 13/253 (5%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---TTTGCTCGAATACATTAG 127 || ||||||||| | |||||||||| | |||||||||| || | | |||||| | Sbjct 61722 ACGTTTACTTTGCACAAATTAGAGTACTTAAAGCAGGCCACGTTCGATTGAATACT---G 61778 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG---T 184 ||||||||||| ||||||||| | |||||||||||| ||||||| | ||| | ||| | Sbjct 61779 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTATTGGTTTTTCGGAACTCCGAGAT 61837 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||||||||||||| || |||||| | ||||| | ||| ||||||||||||| Sbjct 61838 AATGATTAATAGGGTCAGATGGGGGTATTCGTATTGCGACATTAGAAGTGAAATTCTTGG 61897 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGA--TGTTTTCATTAATCAGT 302 || | ||||| || |||||||| || |||| | |||||| |||||| | Sbjct 61898 ATCTTCGCAAGACGGACACAAGCGAAAGCATTTGCCAAAAATTTGTTTTTATTAATTA-A 61956 Query 303 GAACGAAAGTTAG 315 ||| |||| |||| Sbjct 61957 GAAAGAAAATTAG 61969 >seq347 Length=255 Score = 102 bits (112), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 5/134 (4%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| || |||||| || | ||| || ||||||||||| ||||||||||| | Sbjct 123 TGCTCTTTACCGGGTGTCGAGGTGGGCCGATACGTTTACTTTGAACAAATTAGAGTGCTT 182 Query 100 AAAGCAGG---CCTTTGCTCGAATA-CATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| |||| || ||||| | |||||||||||| ||||||||| | |||| Sbjct 183 AAAGCAGGCTACCTTCGCCTGAATATTCTGTGCATGGAATAATGGAATAGGACCT-CGGT 241 Query 156 TCTATTTTGTTGGT 169 |||||||||||||| Sbjct 242 TCTATTTTGTTGGT 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915173770368