Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq297 212 1e-52 seq63 203 5e-50 seq7 170 3e-40 seq119 161 2e-37 seq203 138 2e-30 seq30 127 3e-27 >seq297 Length=283509 Score = 212 bits (234), Expect = 1e-52 Identities = 219/293 (75%), Gaps = 49/293 (17%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 8788 TCCTTCAGTGTAGCGCGCCTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 8847 Query 72 CCTCAAACTTCCATT-GGCTGGAAGCCAATAGTCCCTCTAAGAAG-----CCAG------ 119 | |||| | || | |||| |||||| || ||||||||||| || | Sbjct 8848 C-TCAATC--CCGTGCGGCTAGAAGCCGCCTGTTCCTCTAAGAAGATTTGCCTGTACGTT 8904 Query 120 ------------CCACCAACCATAGTCGATGG----------------------GGCTAT 145 ||||| ||| || || || | |||| Sbjct 8905 GGTAGTAAAAACCCACCGACCGAAGCCGGGGGCCTTCGAGATACCATAAGTCACGTCTAT 8964 Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 8965 TTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTA 9024 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 9025 AGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 9077 >seq63 Length=1487516 Score = 203 bits (224), Expect = 5e-50 Identities = 216/293 (74%), Gaps = 48/293 (16%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381080 TCCTTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 381021 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-------------- 117 | |||| || | |||| |||||| || ||||||||||| Sbjct 381020 C-TCAATCT-CGTGCGGCTAGAAGCCGCCTGTTCCTCTAAGAAGATTTGTCTGTACGTTG 380963 Query 118 ---------AGCCACCAACCATAGTCGATGG----------------------GGCTATT 146 | ||||| ||| || || || | ||||| Sbjct 380962 GTAGTAAAAACCCACCGACCGAAGCCGGGGGCCTTCGAGATACCATAAGTTACGTCTATT 380903 Query 147 TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAA 206 ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 380902 TAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAA 380843 Query 207 GAACG-GCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 380842 GAACGCACCATGCACCACCACCCACCGAATCAAGAAAGAGCTATCAATCTGTC 380790 >seq7 Length=2174736 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||||||||||| ||||||||||||| ||||| |||||||| Sbjct 1569787 CTATTTAGCAGGCTAGAGTCTCGTTCGTTATTGGAATTAACCAGATAAATCGCTCCACCA 1569846 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||| Sbjct 1569847 ACTAAGAACGGCCATGCACCACAACCCATCGAATCAAGAAAGAGTTATCAATCTGTC 1569903 Score = 73.4 bits (80), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 13 CCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || ||| | ||||||||||||||||||||| |||||| |||||||||||| |||||| Sbjct 1569620 CCTTCAATATAGCGCGCGTGCGGCCCAGAATATCTAAAGGCATCACAGAC---TTATTG- 1569675 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||| | || |||| ||| | | || ||||||||||| Sbjct 1569676 TTCAATC-TCGTGCGGCTAGAAACTGCTTGTTCCTCTAAGAAG 1569717 >seq119 Length=715947 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || ||||||||||||||||||||||||||||||||| |||||| | Sbjct 8837 CTATTTAGTAGGCTACAGTCTCGTTCGTTATCGGAATTAACCAGACAAATTGCTCCACTA 8778 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct 8777 ACTAAGAACGGCCATGCACCACTACTCACCGAATCAAGAAAGAGCTATCAATCTGTC 8721 Score = 86.0 bits (94), Expect = 1e-14 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 19 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAA 78 ||||| ||| |||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 9004 GTGTAACGCACGTGCGGCACAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAAT 8946 Query 79 CT 80 || Sbjct 8945 CT 8944 >seq203 Length=273199 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||| || ||||| |||||||| | ||||||||||||||||| ||||||||| Sbjct 62330 TATTTAGCAGGCTAGAGTCTCTTTCGTTATTGAAATTAACCAGACAAATCGCTCCACCAA 62271 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | || || |||||||||||||||| || |||| || || |||||||||||||||| Sbjct 62270 CAAAAAATGGCCATGCACCACCACTCAACGAATTAATAAGGAGCTATCAATCTGTC 62215 >seq30 Length=830597 Score = 127 bits (140), Expect = 3e-27 Identities = 78/83 (94%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 43089 CTATTTAGCAGGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 43148 Query 202 ACTAAGAACGGCCATGCACCACC 224 ||||||||||||||||||||||| Sbjct 43149 ACTAAGAACGGCCATGCACCACC 43171 Score = 95.1 bits (104), Expect = 2e-17 Identities = 59/62 (95%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 || |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 42921 TCCGTGTAGCGCGCGTGCGGCCCAGAATATCTAAGGGCATCACAGACCTGTTATTG-CTC 42979 Query 76 AA 77 || Sbjct 42980 AA 42981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796777877346