Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq34 334 1e-89 seq30 334 1e-89 seq332 304 2e-80 seq117 239 8e-61 seq136 84.2 4e-14 seq57 82.4 1e-13 seq17 73.4 7e-11 >seq34 Length=3484276 Score = 334 bits (370), Expect = 1e-89 Identities = 246/283 (87%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 1882779 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 1882720 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 1882719 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 1882660 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1882659 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1882600 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| || Sbjct 1882599 TGAACGCTTGGCCGCCAGAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 1882540 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| ||| | |||||||||||||||| ||||| Sbjct 1882539 GAAAACTCTTCAAGG--CAAAAGGATCGATAGGCCGTGCTTTC 1882499 >seq30 Length=830597 Score = 334 bits (370), Expect = 1e-89 Identities = 246/283 (87%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 3911 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 3970 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 3971 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 4030 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4031 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 4090 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 4091 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 4150 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| | | | |||||||||||||||| ||||| Sbjct 4151 GAAAACTCTTCAA--GCCAAAAGGATCGATAGGCCGTGCTTTC 4191 Score = 313 bits (346), Expect = 4e-83 Identities = 241/283 (85%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 48553 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 48612 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| | | ||||||||||||| |||||| || Sbjct 48613 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTAGGCGGGTGAACAATCCGACGCTTGGCG 48672 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||||| |||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct 48673 AATTCTGCTTCGGAATGATAGGAAGAGCCGTCATCGAAGAATCAAAAAGCGACGTCGCTA 48732 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 ||||| |||||| ||||||||||||||||| |||| |||||||||||| |||| || || Sbjct 48733 TGAACTCTTGGCAGCCACAAGCCAGTTATCACTGTAGTAACTTTTCTGACACCACTTGCT 48792 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||| ||| ||| | |||||||||||||||| ||||| Sbjct 48793 GAAAACTCTTCAAGG--CAAAAGGATCGATAGGCCGTGCTTTC 48833 >seq332 Length=6729 Score = 304 bits (336), Expect = 2e-80 Identities = 210/236 (89%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 |||||||||||||| |||||||||||||||||||||||||||| || | ||||||||||| Sbjct 1765 ACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAAT 1706 Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 || |||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1705 CCGACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAA 1646 Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1645 AGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 1586 Query 227 GGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | ||||||| || ||| ||| ||| | |||||||||||||||| ||||| Sbjct 1585 GACACCTCTTGCTGAAAACTCTTCAAGG--CAAAAGGATCGATAGGCCGTGCTTTC 1532 >seq117 Length=436630 Score = 239 bits (264), Expect = 8e-61 Identities = 169/192 (88%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 264091 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 264150 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||| || | ||||||||||||| |||||| || Sbjct 264151 ACGACGGTCTAAACCCAGCTCACGTTCCCTGTTGGCGGGTGAACAATCCGACGCTTGGCG 264210 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 264211 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 264270 Query 180 TGAACGCTTGGC 191 |||| | || || Sbjct 264271 TGAAGGATTCGC 264282 >seq136 Length=2137950 Score = 84.2 bits (92), Expect = 4e-14 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||||||||||||| Sbjct 1615728 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTAACCTGTCTC 1615669 Query 60 ATGACGGTCTAAACCCAG 77 | |||||||||| ||||| Sbjct 1615668 ACGACGGTCTAATCCCAG 1615651 >seq57 Length=1896322 Score = 82.4 bits (90), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | |||| |||||||||||||||||||| ||||||||| Sbjct 1163905 TACTGAGCAGGATTACTATCGCAACGACTAGTCATCAGTAGGGTAAAACTGACCTGTCTC 1163964 Query 60 ATGACGGTCTAAACCCAGCT 79 | |||||||||| ||||||| Sbjct 1163965 ACGACGGTCTAATCCCAGCT 1163984 >seq17 Length=571922 Score = 73.4 bits (80), Expect = 7e-11 Identities = 46/50 (92%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCT 79 |||||||||||||||||| |||||||||||| |||||||||| ||| ||| Sbjct 111512 GTCATCAGTAGGGTAAAATTAACCTGTCTCACGACGGTCTAATCCCTGCT 111561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854375512896