Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq297 91.5 9e-17 seq63 91.5 9e-17 seq30 82.4 5e-14 >seq297 Length=283509 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 8587 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 8643 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 8644 GGCAGGGACGTAAT-CAACGCGAGCT 8668 >seq63 Length=1487516 Score = 91.5 bits (100), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||||||||| Sbjct 381281 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAG 381225 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 |||||||||||||| |||||| |||| Sbjct 381224 GGCAGGGACGTAAT-CAACGCGAGCT 381200 >seq30 Length=830597 Score = 82.4 bits (90), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| ||||| |||| Sbjct 42716 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTAGAAAG 42772 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 ||||||||||| || |||||| |||| Sbjct 42773 GGCAGGGACGT-ATTCAACGCGAGCT 42797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300791917880