Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq30 122 9e-26 seq844 105 7e-21 seq203 98.7 1e-18 seq347 82.4 8e-14 >seq30 Length=830597 Score = 122 bits (134), Expect = 9e-26 Identities = 140/183 (77%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG---CCTTTGCTCGAATAC-ATTA 65 || ||||||||||| ||||||||| | | |||||||| |||| || |||||| | Sbjct 43589 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTACCTTCGCCTGAATACTGTGT 43530 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CG 123 ||||||||||| ||||||||| | |||||||||||||| ||||| | ||| | || | Sbjct 43529 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAGCCCCGAGG 43472 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||||| |||| ||| || ||||| | ||||| || | |||||||||||||| Sbjct 43471 TAATGATTAATAGGGACAGATGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTG 43412 Query 184 GAT 186 ||| Sbjct 43411 GAT 43409 >seq844 Length=225 Score = 105 bits (116), Expect = 7e-21 Identities = 124/164 (76%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 28 TTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGA 86 |||||| | |||||||| |||| |||| | |||||||| ||||| |||| | |||||| Sbjct 1 TTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGA 60 Query 87 CGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGG 146 | || | ||||| ||| || | ||| || |||||||| || | ||| |||||| Sbjct 61 TTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTAACAGGGACAGTCGG 118 Query 147 GGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| | ||||| || |||| ||||||||||||||||||||| Sbjct 119 GGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 162 >seq203 Length=273199 Score = 98.7 bits (108), Expect = 1e-18 Identities = 133/182 (73%), Gaps = 9/182 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTAC 66 || ||||||||| | ||||||||| | |||||||||| || | | |||||| Sbjct 61722 ACGTTTACTTTGCACAAATTAGAGTACTTAAAGCAGGCCACGTTCGATTGAATACTG--- 61778 Query 67 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCC--CGT 124 ||||||||||| ||||||||| | |||||||||||| | ||||| | ||| | || | Sbjct 61779 CATGGAATAATGGAATAGGACCT-CGGTTCTATTTTATTGGTTTTTCGGAACTCCGAGAT 61837 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 |||||| |||| || || |||||| | ||||| | | | ||||||||||||| Sbjct 61838 AATGATTAATAGGGTCAGATGGGGGTATTCGTATTGCGACATTAGAAGTGAAATTCTTGG 61897 Query 185 AT 186 || Sbjct 61898 AT 61899 >seq347 Length=255 Score = 82.4 bits (90), Expect = 8e-14 Identities = 82/103 (80%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG---CCTTTGCTCGAATA-CATTA 65 || ||||||||||| ||||||||| | | |||||||| |||| || ||||| | Sbjct 154 ACGTTTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTACCTTCGCCTGAATATTCTGT 213 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT 108 ||||||||||| ||||||||| | |||||||||||||| ||| Sbjct 214 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGT 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511985784640