Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq63 232 1e-58 seq297 226 5e-57 seq30 185 2e-44 seq119 156 8e-36 seq203 113 9e-23 seq7 73.4 7e-11 >seq63 Length=1487516 Score = 232 bits (256), Expect = 1e-58 Identities = 209/258 (81%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| || ||||| | ||||| || | ||||| |||||||||||||||| Sbjct 380979 CTTCTTAGAGGAACAGGCGGCTTCTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTG 381036 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| || || || ||| Sbjct 381037 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGGAATCAGCGTGTTTT--- 381093 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | ||| Sbjct 381094 CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTTG 381153 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 381154 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATT 381213 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 381214 ACGTCCCTGCCCTTTGTA 381231 >seq297 Length=283509 Score = 226 bits (250), Expect = 5e-57 Identities = 209/259 (81%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCG-ATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||| || ||||| | ||||| | || | ||||| ||||||||||||||| Sbjct 8889 CTTCTTAGAGGAACAGGCGGCTTCTAGCCGCACGGGA--TTGAG-CAATAACAGGTCTGT 8833 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||||||||||||||||||||||||| |||||||||||||| || || || ||| Sbjct 8832 GATGCCCTTAGATGTTCTGGGCCGCAGGCGCGCTACACTGAAGGAATCAGCGTGTTTT-- 8775 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || |||||| |||| | |||||| | | || ||| ||||||| ||||| | | || Sbjct 8774 -CCCTGGCCGAAAGGCCCGGGTAACCCGCTGAACCTCCTTCGTGCTAGGGATTGGGGCTT 8716 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||||||| ||||| ||| ||||||||| Sbjct 8715 GCAATTATTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGAT 8656 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 8655 TACGTCCCTGCCCTTTGTA 8637 >seq30 Length=830597 Score = 185 bits (204), Expect = 2e-44 Identities = 197/257 (77%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||| |||| || ||||| ||||| || | ||||| ||||||||||||||||| Sbjct 43017 CTTCTCTGAGGAACAGGCGGCTTTAGCCGCACGA-GATTGAG-CAATAACAGGTCTGTGA 42960 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||| |||||||||||||||||||||||| || || || ||| | Sbjct 42959 TGCCCTTAGATATTCTGGGCCGCACGCGCGCTACACGGAAGTTATCAGCGTGTTTT---C 42903 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 | |||||| ||| | |||||| | | || ||| ||||| | ||||| | | |||| Sbjct 42902 CCTGGCCGAAAGTCCGGGGTAACCCGCTGAACCTCCTTCGTGTTAGGGATTGTGTCTTGC 42843 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 ||||||| | | | |||||||||| || |||||||||| |||| ||| |||||||| || Sbjct 42842 AATTATTCCCCATGAACGAGGAATTCCAAGTAAGCGCGAATCATAAGCTCGCGTTGAATA 42783 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||| || Sbjct 42782 CGTCCCTGCCCTTTCTA 42766 >seq119 Length=715947 Score = 156 bits (172), Expect = 8e-36 Identities = 170/223 (76%), Gaps = 12/223 (5%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||||||| |||||||| ||| ||| Sbjct 8944 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTTCTGTGCCGCACGTGCGTTAC 9002 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 || || || ||| || |||||| ||||| |||||| | | || || Sbjct 9003 ACAT-------CAGCGCGTTTT---CCCTGGCCGAAAGGTTCGGGTAACCCGCTGAATCT 9052 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | | ||||| ||||| | | ||||||||||| | | || ||||||| || |||||| Sbjct 9053 CCTTTGTGCTAGGGATTGGGGCTTGCAATTATTTCCTATGAATGAGGAATTCCCAGTAAG 9112 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||| ||| |||||||||||| | |||||||||||| Sbjct 9113 CGCGAGTCATAAGCTCGCGTTGATTACAT-TCTGCCCTTTGTA 9154 >seq203 Length=273199 Score = 113 bits (124), Expect = 9e-23 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 118 TAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCC 177 |||||| || |||||||||||||||||| |||| |||||| | | || |||| ||| Sbjct 62448 TAACAGATCCGTGATGCCCTTAGATGTTGTGGGTCGCACGTGTCCCACGCTGA-AGA--- 62503 Query 178 AACGAGT-TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236 || ||| | | || || | || | || |||| | | || ||| |||||||| Sbjct 62504 AATCAGTGTGTTTTCCCTGA--GTAAAGACTCAGTAACCCACTAAAGCTCCGTCGTGCTA 62561 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAAC-GAGGAATGCCTAGTAAGCGCGTGTCAT 295 ||| | ||| |||| |||||| | | ||| ||||||| || ||||||||||||| || Sbjct 62562 GGGGTTGAGACTTGCGATTATTCTCCATGAACTGAGGAATTCCCAGTAAGCGCGTGTTAT 62621 Query 296 CAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || |||||||||||||||| | | |||| Sbjct 62622 AAGCTCGTGTTGATTACGTCCCTGTCTTGTGTA 62654 >seq7 Length=2174736 Score = 73.4 bits (80), Expect = 7e-11 Identities = 79/100 (79%), Gaps = 6/100 (6%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||| || | | | | | ||||| || | |||| |||||| ||||||| Sbjct 1569717 CTTCTTAGAGGAACAAGCAGTTTCTAGCCGCACGA-GATTGAA-CAATAA---GTCTGTG 1569663 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 ||||| |||||| ||||||||||||||||||||| | ||| Sbjct 1569662 ATGCCTTTAGATATTCTGGGCCGCACGCGCGCTATATTGA 1569623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947172853248