Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1303 374 3e-101 seq295 298 2e-78 seq236 298 2e-78 seq30 257 5e-66 seq332 206 9e-51 seq201 145 2e-32 seq224 127 7e-27 seq138 125 2e-26 seq34 118 3e-24 seq92 77.0 1e-11 seq281 75.2 4e-11 >seq1303 Length=286 Score = 374 bits (414), Expect = 3e-101 Identities = 231/246 (94%), Gaps = 3/246 (1%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||| |||| || ||||||||| |||| ||| ||||||||||||||||||||||| | Sbjct 243 TCCGATTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGGA- 185 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 --GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 127 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 126 CAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 67 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 7 Query 414 ATGACG 419 |||||| Sbjct 6 ATGACG 1 >seq295 Length=9551 Score = 298 bits (330), Expect = 2e-78 Identities = 171/175 (98%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4420 AGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 4361 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 4360 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTTTTT 4301 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 4300 GAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 4246 >seq236 Length=108573 Score = 298 bits (330), Expect = 2e-78 Identities = 171/175 (98%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 100248 AGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 100307 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 100308 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTTTTT 100367 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 100368 GAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 100422 Score = 89.7 bits (98), Expect = 2e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||||||||| |||| | ||||| |||||||||||||| ||||||| |||||||||||| Sbjct 66791 AGTAGATAGGAACAGAGAAAATCTTGTTAATCCATTCATACGCGTCATTAATTAGATGAC 66732 Query 419 GAGGCATTTGGCTA 432 ||||||||| || Sbjct 66731 AGGGCATTTGGGTA 66718 >seq30 Length=830597 Score = 257 bits (284), Expect = 5e-66 Identities = 162/175 (93%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| | ||| ||||||||||||||||||||||||||||||| Sbjct 10991 AGTAGATAGGGACAGAACCCTTGAAGTTGATCCATTCATGCGCGTCACTAATTAGATGAC 11050 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 11051 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTTTTT 11110 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 11111 GAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 11165 Score = 208 bits (230), Expect = 2e-51 Identities = 161/190 (85%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCAC 243 || |||||||| ||||||| | ||||||||||||||| ||| | || ||||||| Sbjct 49115 GAGTAAGTAAAGAAACGATGAAAGTAGTGGTATTTCACCGGCGATGTTACCATCTCCCAC 49174 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| ||| | |||| | | ||||||||||||||||||||||||| Sbjct 49175 TTATGCTACACCTCTCATGTCTCCTTACAATGCCAGACTAGAGTCAAGCTCAACAGGGTC 49234 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 49235 TTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAG 49294 Query 364 ATAGGGACAG 373 |||||||||| Sbjct 49295 ATAGGGACAG 49304 Score = 206 bits (228), Expect = 9e-51 Identities = 160/189 (85%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCAC 243 || |||||||| ||||||| | ||||||||||||||| ||| | || ||||||| Sbjct 4473 GAGTAAGTAAAGAAACGATGAAAGTAGTGGTATTTCACCGGCGATGTTACCATCTCCCAC 4532 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| ||| | |||| | | ||||||||||||||||||||||||| Sbjct 4533 TTATGCTACACCTCTCATGTCTCCTTACAATGCCAGACTAGAGTCAAGCTCAACAGGGTC 4592 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 4593 TTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAG 4652 Query 364 ATAGGGACA 372 ||||||||| Sbjct 4653 ATAGGGACA 4661 Score = 125 bits (138), Expect = 2e-26 Identities = 72/74 (97%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 37422 AGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 37481 Query 419 GAGGCATTTGGCTA 432 |||||||||| ||| Sbjct 37482 GAGGCATTTGACTA 37495 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 4238 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 4297 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 4298 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 4357 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 48880 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 48939 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 48940 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 48999 Score = 116 bits (128), Expect = 1e-23 Identities = 70/74 (95%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||| Sbjct 73851 AGTAGATAGAGACAGAGGAAATCTCGTTAATTCATTCATGCGCGTCACTAATTAGATGAC 73910 Query 419 GAGGCATTTGGCTA 432 |||||||||||||| Sbjct 73911 GAGGCATTTGGCTA 73924 >seq332 Length=6729 Score = 206 bits (228), Expect = 9e-51 Identities = 160/189 (85%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-CTCCCAC 243 || |||||||| ||||||| | ||||||||||||||| ||| | || ||||||| Sbjct 1250 GAGTAAGTAAAGAAACGATGAAAGTAGTGGTATTTCACCGGCGATGTTACCATCTCCCAC 1191 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||||||||||| ||| | |||| | | ||||||||||||||||||||||||| Sbjct 1190 TTATGCTACACCTCTCATGTCTCCTTACAATGCCAGACTAGAGTCAAGCTCAACAGGGTC 1131 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 1130 TTCTTTCCCCGCTAATTTTTCCAAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGAAAGTAG 1071 Query 364 ATAGGGACA 372 ||||||||| Sbjct 1070 ATAGGGACA 1062 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 1485 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 1426 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 1425 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 1366 >seq201 Length=172211 Score = 145 bits (160), Expect = 2e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||| ||||||||||||| ||| ||| || ||||||||||| || Sbjct 58179 CTTAAGAGAGTCATAGTTATTCCCGCCGTTTACTCGCACTTTTTTTAATTTCTTCACGTT 58238 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||| |||||||||||||| Sbjct 58239 GACATTCAGAGCACTGGGCAGAAATTACATTGCGTCAACA 58278 >seq224 Length=60529 Score = 127 bits (140), Expect = 7e-27 Identities = 73/75 (97%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3833 TAGTAGATAAGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 3774 Query 418 CGAGGCATTTGGCTA 432 ||||||||||||||| Sbjct 3773 CGAGGCATTTGGCTA 3759 >seq138 Length=348458 Score = 125 bits (138), Expect = 2e-26 Identities = 71/72 (99%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 19330 AGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 19271 Query 419 GAGGCATTTGGC 430 |||||||||||| Sbjct 19270 GAGGCATTTGGC 19259 >seq34 Length=3484276 Score = 118 bits (130), Expect = 3e-24 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||| Sbjct 1882452 CTTTTGCTCTACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 1882393 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||| Sbjct 1882392 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAATCGGATC 1882333 >seq92 Length=152963 Score = 77.0 bits (84), Expect = 1e-11 Identities = 62/74 (84%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 ||| ||||||||||| |||||||||||||||| ||||||| | || |||||||| ||| Sbjct 9608 AGTTGATAGGGACAGAGGGAATCTCGTTAATCTATTCATGTGAGTTACTAATTAAATG-- 9665 Query 419 GAGGCATTTGGCTA 432 | |||||| |||| Sbjct 9666 GCAGCATTTAGCTA 9679 >seq281 Length=336744 Score = 75.2 bits (82), Expect = 4e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 ||||||||||| ||||||| |||||||||||||| |||||||||||||| Sbjct 34060 CCAAGCCCGTTTCCTTGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACA 34012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635153135168