Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melipona_20quadrifasciata_20[genbank_20GCA_5F001276565.1_202015-09- 04] 2,866 sequences; 256,302,695 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq30 421 2e-115 seq1204 279 2e-72 seq203 201 3e-49 >seq30 Length=830597 Score = 421 bits (466), Expect = 2e-115 Identities = 425/546 (78%), Gaps = 50/546 (9%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| ||||| | || | | ||| || ||||| ||||| | ||||||||| Sbjct 43851 GTACTCATTCCGATTACGGGGCCTCGGATGAGTCCCGTATCGTTATTTTTCGTCACTACC 43910 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 43911 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCTGT 43970 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 43971 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 44030 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG-- 237 |||| | ||||||||||| |||||||| |||||| ||||||| || | |||||| Sbjct 44031 AGGCGCAGAACCTACCATCGACAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 44090 Query 238 GCT-CAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAAGGAGC-CCCGAAGGG 293 ||| | | ||||||||| | | |||||||| || ||||||| ||| ||| || Sbjct 44091 GCTAGATGACCATGCGATCGGCATAAAGTTATTCAGAGTCACCAA--AGCAAACGATGGA 44148 Query 294 CG-----------------------TTGGTTTTTTATCTAATAAATACACCCCTTCCGAA 330 || |||| | || |||||||||| || || ||| | Sbjct 44149 CGGACAGCGAGCCATCCGCCACCGATTGG-TCTTGATCTAATAAAAGCATTCC-TCCCAT 44206 Query 331 GTCGGGG-------TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA- 382 || | | | || |||||||||||||||||||||||||| |||||||| ||| Sbjct 44207 CTCTGAGAGGAACTTCGTTTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAA 44266 Query 383 --GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 || ||||| ||| || |||| ||||||||||||||||||||||||| |||||||| | Sbjct 44267 ATGT-GGGTACGATCTAAGAAACCATAACTGATTTAATGAGCCATTCGCGGTTTCACTTT 44325 Query 441 ATAGATT--GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 | ||| || | |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 44326 A---ATTCAGCCTGTACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 44382 Query 499 TGGCAG 504 |||||| Sbjct 44383 TGGCAG 44388 >seq1204 Length=270 Score = 279 bits (308), Expect = 2e-72 Identities = 228/271 (84%), Gaps = 11/271 (4%) Strand=Plus/Minus Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGA----AGG--GCG 295 ||||||||||||| ||| |||||| |||||||| || |||| || || ||| Sbjct 268 AAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCGCG 211 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||| Sbjct 210 TCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAG 151 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| |||||| | ||| |||||| |||| |||||||||| Sbjct 150 CTCTAGAATTACTACGGTTATCCGAGTAGTA-GTTACCATCAAACAAACTATAACTGATT 92 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| || | ||| || ||||||| |||||||||||||| Sbjct 91 TAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTA 32 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 31 ATCTTTGAGACAAGCATATGACTACTGGCAG 1 >seq203 Length=273199 Score = 201 bits (222), Expect = 3e-49 Identities = 325/465 (70%), Gaps = 68/465 (15%) Strand=Plus/Minus Query 87 GCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAA 146 ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || Sbjct 61395 GCGCCTGCTGCCTTCCTTGAATGTGGTAGCTGTTTCTCAGGCTCCCTCTCCGGAAATGA- 61337 Query 147 CCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 || ||||||||| ||| ||||| ||||| | ||||||||||| |||| Sbjct 61336 ------TTTCCCGTTACCTGTTACAACCATAATAGGCGCAGAACCTACCATCGACAGTTA 61283 Query 207 ATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGC---CATGCGATTCG--TTAA 261 ||| | |||| ||||||| || | ||||| | | || |||||||| | | || Sbjct 61282 ATAAGACAGACATTTGAAAGAGACGTCGCCAGTGCTAGATGATCATGCGATCAGCATAAA 61223 Query 262 GTTATTATGAATCACCAAGG--AGCCCCGAAGGG-------------------CG-TTGG 299 |||| | || ||||||| | | ||| || || |||| Sbjct 61222 GTTACTCAGAGTCACCAAAACAAACGATGAACGGACAACAAGCCATCCGCCACCGATTGG 61163 Query 300 TTTT-----TTATCTAATAAATACA----CCCCTTC-------CGAAGTCGGGGTTTTTA 343 |||| | |||||||||| || |||| || |||| || |||| Sbjct 61162 TTTTGAATCTAATCTAATAAAAGCATTCCCCCCATCTCTGAAACGAAATC-----TTTTT 61108 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGT-AGTAAGG-TACTATCAAATAA 401 |||||||||||||||||||||||||| |||||||| || | | || ||| ||| || || Sbjct 61107 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGATACGATCTAAGAA 61048 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAG 459 || |||||||||||||||| |||| || |||||||| || ||| || | |||| || Sbjct 61047 ACCGTAACTGATTTAATGAGTCATTTGCGGTTTCACTTTA---ATTCAGCCTGTACTGAG 60991 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || |||||| ||||||||||||||||| |||||| |||| Sbjct 60990 ACGTGCATG------ACTTTGAGACAAGCATATAACTACTAGCAG 60952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510356711936