Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq1 482 8e-134
seq1022 152 2e-34
seq1814 75.2 4e-11
>seq1
Length=8004
Score = 482 bits (534), Expect = 8e-134
Identities = 321/355 (90%), Gaps = 9/355 (3%)
Strand=Plus/Minus
Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA-----AACGG-CT 238
|| ||||||| |||| || | |||||||| ||||| ||| ||| | || ||
Sbjct 6820 GAGTAAGTAATGAAACAATGAAAGTAGTGGTTTTTCA---GCGACGACCGCGAGCGATCT 6764
Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298
||||||||| |||||||||||| ||| | |||| | | ||||||||||||||||||||
Sbjct 6763 CCCACTTATGCTACACCTCTCATGTCTCCTTACAATGCCAGACTAGAGTCAAGCTCAACA 6704
Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 6703 GGGTCTTCTTTCCCCGCTGATTCTCCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 6644
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6643 AGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 6584
Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 6583 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTT 6524
Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6523 GAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 6469
Score = 118 bits (130), Expect = 3e-24
Identities = 98/120 (82%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||||||||| || ||| ||||||| ||| |||| ||||||||||||||||||||
Sbjct 7053 CTTTTGCTCCACGCGAGGTTTCTGTCCTCGCTGAGCTGGCCTTAGGACACCTGCGTTATT 6994
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||| |||||||| ||||||||| |||||||||| |||| || |||| || | |||||||
Sbjct 6993 CTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGGCAGTGTCCTCGAACCGGATC 6934
>seq1022
Length=194962
Score = 152 bits (168), Expect = 2e-34
Identities = 87/89 (98%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 18638 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGAC 18697
Query 497 ATTCAGAGCACTGGGCAGAAATCACATTG 525
|||||||||||||||||||||||||||||
Sbjct 18698 ATTCAGAGCACTGGGCAGAAATCACATTG 18726
Score = 129 bits (142), Expect = 2e-27
Identities = 73/74 (99%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14012 AGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 14071
Query 419 GAGGCATTTGGCTA 432
||||||||||||||
Sbjct 14072 GAGGCATTTGGCTA 14085
>seq1814
Length=297214
Score = 75.2 bits (82), Expect = 4e-11
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 492 TTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 110488 TTGACATTCAGAGCACTGGGCAGAAATCACACTGCGTCAACATC 110531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635064916128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |