Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09]
8,261 sequences; 389,907,520 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1 405 2e-110
seq2809 102 2e-19
>seq1
Length=8004
Score = 405 bits (448), Expect = 2e-110
Identities = 409/529 (77%), Gaps = 26/529 (5%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||||||||||| ||||| || || | |||||| || ||||| ||||| | |||||||||
Sbjct 1373 GTACTCATTCCGATTACGAGGCCTCGAAAGAGTCCCGTATCGTTATTTTTCGTCACTACC 1314
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 TCCCCGTGCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1254
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1253 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGACAACCATGGT 1194
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239
|| | | ||||||||||||||||||| |||||| ||||||| || | |||||||
Sbjct 1193 AGTCGCAGAAACTACCATCGAAAGTTGATAAGGCAGACATTTGAAAGATGCGTCGCCGGT 1134
Query 240 TCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACCAA-------------GGA--- 282
| | ||||||||| | ||||||| || ||| ||| |||
Sbjct 1133 ACTGGACCATGCGATCGGCAAAAGTTATCCAGATTCATCAAAATTAACGACTTCGGACGA 1074
Query 283 -GCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACAC----CCCTTCCGAAGTCGGGG 337
| || | || | | |||| |||||||||| ||| ||| || ||| | |
Sbjct 1073 GACGCCCTCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGAG 1014
Query 338 TTTT--TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395
|| | | |||||||||||||||||||||||||| |||||||| ||| ||| |||
Sbjct 1013 TTCTGATTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATC 954
Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455
|| ||| | ||||||| || |||||||||||| || || | || | | |||| ||
Sbjct 953 TAAGGAACCAAAACTGATATATTGAGCCATTCGCGGTATCGCCTTA-ATACGGCTTGCAC 895
Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 TGAGACATGCATGGCTTAATCTTTGAGACAAGCATATAACTACTGGCAG 846
>seq2809
Length=69525
Score = 102 bits (112), Expect = 2e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115
||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 32373 TACTTCTTCGTTCCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 32432
Query 116 CCGTTTCTCAG 126
|||||||||||
Sbjct 32433 CCGTTTCTCAG 32443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510275225856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |