Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq538 181 8e-41 seq1957 159 3e-34 >seq538 Length=46986 Score = 181 bits (200), Expect = 8e-41 Identities = 948/1503 (63%), Gaps = 49/1503 (3%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || || || || || ||||||||||| | || || | | ||||||||| || || Sbjct 41443 ATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCAGT 41502 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 || | || ||||||||||||||| || |||| ||||||| ||||||| || || Sbjct 41503 TTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGTTC 41562 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACG-ACCACGATCTGCAGCCA 65255 || ||||| ||||| || |||||||||||||| || |||| || | ||||||||||| Sbjct 41563 AGCTACATGAATATTAAATGACTGACTCTGATCAAT-AAACGCTCCTCTATCTGCAGCCA 41621 Query 65256 TGTCAATGATACGACGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 | | || | | || | || || ||||| || |||||||| | | | || | Sbjct 41622 TTTGTAT-AGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTTT 41680 Query 65315 ATTGGAATCTCCTCAATGTCCTGGACTGAACCA-CGACGTGCAATAATGCGATTACGCAT 65373 ||||||||| ||||| | || | || ||| | ||| ||| || ||| ||| Sbjct 41681 TTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTG-AATTATCAAATTTTTCAT 41739 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTG 65433 || ||| || | | | | | || | | | ||| | || | ||||| Sbjct 41740 ATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGTTAACAACTTG 41799 Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 ||||| || || | ||| || || || ||||| || || | |||||||| ||||| Sbjct 41800 AAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGATTC 41859 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 | | || || || || || || || || ||||||||||| ||||| | ||| | || || Sbjct 41860 ATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAATT 41919 Query 65554 TCGCAATCCGTTCATTTCAA----TGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTT 65609 || | || | | || ||| | || | | ||| | ||| | ||||| | | Sbjct 41920 ACGAAGACCATGCTTTGCAATTTTTCTTTTAAGGCAGT-----CCAATCCCACA---GAT 41971 Query 65610 TATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAAC 65669 | || | | | | |||||| || | ||| | | || ||| || || | Sbjct 41972 CA--GTAG-GAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTC 42028 Query 65670 CGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGG 65729 | ||||| ||| || || |||| || || | || ||| || | || | || Sbjct 42029 CATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTC 42088 Query 65730 CAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACG 65789 || | || || || || || || || |||||||| | ||| || || ||||| || | Sbjct 42089 CATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGG 42148 Query 65790 GCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 | | | ||| | ||||| | || || | || ||||| || || || || || | || Sbjct 42149 GAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTAT 42208 Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 | || ||| ||| | || || || || || ||| | || | ||| ||||| || Sbjct 42209 GTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTAT 42268 Query 65910 TCAAATTGCGTGTCACCACATGCACGATAC-GTCGCAATTGTTCGAAATCAAAATGTTTA 65968 | ||||| |||| | || | | | | || |||| || |||| |||| |||| Sbjct 42269 TTAAATTTTGTGT-AACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTA 42327 Query 65969 GGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAG 66028 | |||||| | || || | || || | ||||| Sbjct 42328 ------------------TTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCAC 42369 Query 66029 ACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGT 66088 || || | || ||||| | |||||||| |||||||| ||||| || || ||||| | Sbjct 42370 ACTGCCACTTCATCAGGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTT 42429 Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 || ||||| | ||| | ||||||||| || | ||||| | ||| || |||| ||| || Sbjct 42430 ATAGTGCCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATAT 42489 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC- 66207 || || || || |||||||| | || || || || | ||| | | | |||| || Sbjct 42490 GGTGTTCCTGTTTCAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACT 42549 Query 66208 ---CGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 ||| || || | | | |||| || | ||| || | ||| || ||| Sbjct 42550 TGTTTTACATAGCGTTTTTCTT----GTTCATACTTTTCATATAAAGCTTCAAATTCTTC 42605 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 |||||| || | || | || || ||||| |||||||| || ||||| ||| Sbjct 42606 ACCCCAACAATCAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATT 42665 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 | |||||| || |||||| | ||| |||||||| | || ||||| | || | ||| Sbjct 42666 TTTTTCTACCCGTTTCATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGC 42725 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 |||| || || | || ||| || || || | || ||||||| || || || Sbjct 42726 TCGTACTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTG 42785 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| ||||||| || | || || | || |||||| || ||||| || || || Sbjct 42786 CCAAGGTTCCAAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATA 42845 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 | || || || |||| | ||||| || || || || || || | ||||| || Sbjct 42846 TCTGGCAGTGTTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGT 42905 Query 66565 GCC 66567 || Sbjct 42906 ACC 42908 >seq1957 Length=467265 Score = 159 bits (176), Expect = 3e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||| ||||||||||||| ||||| || ||||||||||| || || || || || |||||| Sbjct 418888 GAAAAACATTTCATTAAGCATGTATTAGCGTTCTTTGCTGCATCAGATGGCATAGTCAAT 418947 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTAC 61305 ||||| | ||||||| || | || || ||||| ||| | || || | |||||||| Sbjct 418948 GAGAACCTTGTGGAACGCTTTTCACAAGAAGTGCAGGTGACAGAAGCTAGGTGTTTCTAT 419007 Query 61306 GGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACG 61365 ||||| |||||||| ||||| ||||| ||||| ||||||||| | | | || ||||| Sbjct 419008 GGCTTTCAGATTGCTATGGAAAATGTACACTCAGAGATGTACTCTTTGTTAATTGATACT 419067 Query 61366 TACATCAGGGA 61376 ||||||||||| Sbjct 419068 TACATCAGGGA 419078 Score = 104 bits (114), Expect = 2e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 ||||| ||||| || ||||| |||| || ||| ||| || || ||||| | | Sbjct 419411 TTGTTTAATGCTATTGAGACATTACCCTGTGTAAAGAAGAAGGCTGACTGGGCTATGCAA 419470 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACG-ATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | || | || || || || |||||||| |||| | || ||||| | || || Sbjct 419471 TGGATTGCAAGCAAGACTGCAACTTTCGGTGAACGTATTG-TAGCTTTTGCTGCAGTTGA 419529 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || |||| ||| |||| ||||| |||| || ||| | ||||| | |||||||| Sbjct 419530 AGGCATATTCTTCTCTGGAAGCTTTGCATCAATATTCTGGCTCAAGAAGAGGGGACTTAT 419589 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 ||| || |||| |||||||||||| |||| ||| | || |||| Sbjct 419590 GCCAGGATTGACTTTCAGCAATGAGCTGATTTCAAGGGATGAGG 419633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 61426 GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGT 61485 || ||| ||| || || ||||| | | ||||| | || | || || || || ||| Sbjct 418805 GTAAAGAAGAAGGCTGACTGGGCTATGCAATGGATTGCAAGCAAGACTGCAACTTTCGGT 418746 Query 61486 GAACG-ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGC 61544 ||||| |||| | || ||||| | || || || |||| ||| |||| ||||| | Sbjct 418745 GAACGTATTG-TAGCTTTTGCTGCAGTTGAAGGCATATTCTTCTCTGGAAGCTTTGCATC 418687 Query 61545 AATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT 61604 ||| || ||| | ||||| | ||||||||||| || |||| |||||||||||| |||| Sbjct 418686 AATATTCTGGCTCAAGAAGAGGGGACTTATGCCAGGATTGACTTTCAGCAATGAGCTGAT 418627 Query 61605 ATCACGCGACGAGG 61618 ||| | || |||| Sbjct 418626 TTCAAGGGATGAGG 418613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397527972481040