Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mochlonyx_20cinctipes_20[genbank_20GCA_5F001014845.1_202015-05-28] 95,131 sequences; 441,264,227 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq39170 113 7e-23 seq31336 96.9 6e-18 seq16644 96.9 6e-18 seq4256 78.8 1e-12 >seq39170 Length=7689 Score = 113 bits (124), Expect = 7e-23 Identities = 99/122 (81%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||| Sbjct 3398 GTCACGTTCGTTATCGGAAATAACCAGACAAATCATTCCACGAACTAGGAACGGCCATGC 3457 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCTCGATAGC-ACAGTT 277 |||| |||| || | ||||| |||||| ||||||| | ||| ||| | ||||| Sbjct 3458 ACCAATACCCTTAATTTTGAGAAAAAGCTATTAATCTGTTTTACCTAAATAACTCCAGTT 3517 Query 278 GC 279 || Sbjct 3518 GC 3519 >seq31336 Length=9710 Score = 96.9 bits (106), Expect = 6e-18 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 |||| ||||||||||||||||||||||||| ||||| |||||||||| | | ||||||| Sbjct 5487 CGTTAATTATCGGAATTAACCAGACAAATCATTCCACGAACTAAGAACTGACGTGCACCA 5546 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| || | || || || ||| |||||||| Sbjct 5547 CCACCCTTAATTTTGAGTAAAAGATATTAATCTGTC 5582 >seq16644 Length=4057 Score = 96.9 bits (106), Expect = 6e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| ||||||||||||||||||||||||||| ||| ||||| |||||| |||||||| || Sbjct 80 GTCACGTTCGTTATCGGAATTAACCAGACAATTCATTCCACGAACTAAAAACGGCCAGGC 21 Query 219 ACCACCACCCATA 231 ||||| |||| || Sbjct 20 ACCACTACCCTTA 8 >seq4256 Length=17394 Score = 78.8 bits (86), Expect = 1e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||| |||||||||||||||| ||||||| ||| || || || ||||||||||||||||| Sbjct 13356 GTCACGTTCGTTATCGGAATCAACCAGATAAACCATTCTACGAACTAAGAACGGCCATGT 13297 Query 219 ACC 221 ||| Sbjct 13296 ACC 13294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796065683811